BAC Information

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BAC

Clone NameMSMg01-399P13
Chromosome12 (Build37)
Map Location 113,494,111 - 113,682,167
singlet/doubletdoublet
Overlap geneA730018C14Rik
Upstream geneTraf3, Amn, Cdc42bpb, A230065H16Rik, 1200009I06Rik, Tnfaip2, Gm266, Eif5, Mark3, Ckb, 6720458F09Rik, Bag5, 2810002N01Rik, Klc1, Xrcc3, Zfyve21, Ppp1r13b, LOC100041886, 2010107E04Rik, BC048943, Tdrd9, A530050D06Rik, Kif26a
Downstream geneA530016L24Rik, Tmem179, 2610204M08Rik, Adssl1, Siva1, Akt1, EG382639, AW555464, LOC382640, Pld4, AI450948, LOC100041194, BC022687, Cdca4, Gpr132, Jag2, Nudt14, Brf1, Btbd6, Pacs2, Tex22, Mta1, Crip2, Crip1, 4930427A07Rik, LOC676349, Tmem121, Igh, Igh-2, Gm900, Igh-1b, Igh-3, Ighg1, AI324046, LOC668370, LOC668375, EG382645, Igh-5, Igh-6, Ighj4, Ighj3, Ighj2, Ighj1, Ighd4-1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399P13.T7 (MSMg01no399_p13.b1)MSMg01-399P13.TJ (MSMg01no399_p13.g1)
ACCAG499705AG499706
length747736
length of high quality
(start - end)		578 (70 - 647)244 (71 - 314)
definitionCHROMAT_FILE: MSMg01no399_p13.b1 PHD_FILE: MSMg01no399_p13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:07 2005CHROMAT_FILE: MSMg01no399_p13.g1 PHD_FILE: MSMg01no399_p13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,494,111 - 113,494,688)(113,681,924 - 113,682,167)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGTATGGATCCGCGGA
ATTCTCACACTTGCAGAAAAGAGCTTGGTACCCACCATCTGCCCCGTCTG
TCCAGCTAACTCCAAATTCCCGCCCGTGTGGGTGGTGGTGTCCACAGGAT
ATTGTCATTGACATTGATGGGCTCTTCTCTTGTTCAGGGAGACATAGGGC
ATCTCCTTTTCTGTATCATGGGGAGGCTGGCTCCCACACTTGTACTGGTA
TGAGACACTCTGGTCCCTGCCAGCCCTGCTTTCTGGAATCCAGTCTCTTC
AATCATGGTTCATGTTTTTTATCTTTTTTATAGATTAATATCTATTCTTG
CTGTAAAGCTCTGAAATCATGACCAATGTACCATGTTGCACATTACAGTT
TGGGTCTGGACTACTCTCAAGGCCCGTGTGAAGGAGAGTTGGCTCCTAGC
CTGGTCTCCATCCAGAGATGGTGGAAGCATGGGAGATGCGTCCTAGAGAT
GCTTAGGTCACTACGTATTGACCGGGCATGTAACAGGTTTCTTCATCTGT
CCTTTGTCGTTTCTGGCAACCAGGCAGAAAGTCTAATTTAGGCTGAAAGC
TGTGAGTCTGATTGAGGGTAGATTGAAACCCCCAAACAATCCTTCTGTCT
TCATAAGTGCGTATTCTCAAGAAAAAGTTGGCTAACACTCCGTGTGTCCC
CAAGAATTGTATCACACAGCATTGTCCTGTCTTTTGTCCCAGTGTCN

TTTCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTGTCAGAGAAATTCCAGGGAAGGAGTGATGGGCACAGAG
CTCCTCTGCTTCCCACTCAGGTGCTGCATAGGGACCGCTCATAGCTGTCA
TCTCCTGTGACATGGTTCTAGTTTCATTTTTGTCCCAGTGACAGAAGCAA
CTCAGGGGAGGAAAGGGTTAACTTGACTTGTGCTTCCATGCTGCTGGTCA
CTGTTTCAGGGACCCAAGCAGCCAGTCACATCACATCCACAGTCAAGAGG
AGAAGAGGAACGCACTCTTTTTCCTGTTGGCTCTGGATTTTCTCCTGTTA
AGTACATTCAGGACCTTCTGACTAGGGAATGGTGCTGCCCACAAGAGCAG
TGGTCTTCCTATATCACCAATAATAGACAATGCTCCATAGACATGGCTGC
AGACCAACCATTATTTTTCCCAAGTAATTCTAAACTGTATTAAGATGACA
TTTACAACTAACTGTCATGGACATTTTAAAAGAATAACTCTCCACTCTCC
TTTAACATGAAGCTCCCATTTGGATTTGGCTGACAGTCATGGAAGAAGAC
AGGGTGAGCCCATCTCTGGTTGAAATCTGGAAGCTATAAAGAGAAGCCCG
ATTGCTGTCTGGCACTGGTGTGCACAGTTGGTCCTGTGCATCCGATCTGG
TACTCCCTGGACAGATAAGTTTTTTTTCCTTGTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_p13.b1 MSMg01no399_p13.b1 CHROMAT_FILE:
MSMg01no399_p13.b1 PHD_FILE: MSMg01no399_p13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:07 2005
         (578 letters)



>mm_chr12_113493911_113494888
          Length = 978

 Score = 1048 bits (542), Expect = 0.0
 Identities = 569/578 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agagcttggtacccaccatctgccccgtctgtccagctaactccaaattcccgcccgtgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 agagcttggtacccaccatctgccccgtctgtccagctaactccaaattccagcccgtgt 260

                                                                       
Query: 61  gggtggtggtgtccacaggatattgtcattgacattgatgggctcttctcttgttcaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggtggtggtgtccacaggatattgtcattgacattgatgggctcttctcttgttcaggg 320

                                                                       
Query: 121 agacatagggcatctccttttctgtatcatggggaggctggctcccacacttgtactggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 321 agacatagggcatctccttttctgtatcatggggaggctggctcccacacttgtactggg 380

                                                                       
Query: 181 atgagacactctggtccctgccagccctgctttctggaatccagtctcttcaatcatggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgagacactctggtccctgccagccctgctttctggaatccagtctcttcaatcatggt 440

                                                                       
Query: 241 tcatgttttttatcttttttatagattaatatctattcttgctgtaaagctctgaaatca 300
           |||||  | | | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcatgggtctaagcttttttatagattaatatctattcttgctgtaaagctctgaaatca 500

                                                                       
Query: 301 tgaccaatgtaccatgttgcacattacagtttgggtctggactactctcaaggcccgtgt 360
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 tgaccaatgtaccatgttgcacattacagtttgggtctggactattctcaaggcccgtgt 560

                                                                       
Query: 361 gaaggagagttggctcctagcctggtctccatccagagatggtggaagcatgggagatgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaaggagagttggctcctagcctggtctccatccagagatggtggaagcatgggagatgc 620

                                                                       
Query: 421 gtcctagagatgcttaggtcactacgtattgaccgggcatgtaacaggtttcttcatctg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtcctagagatgcttaggtcactacgtattgaccgggcatgtaacaggtttcttcatctg 680

                                                                       
Query: 481 tcctttgtcgtttctggcaaccaggcagaaagtctaatttaggctgaaagctgtgagtct 540
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 681 tcctttgtcgtttctggcaaccaggcagaaagtctaatttaggttgaaagctgtgagtct 740

                                                 
Query: 541 gattgagggtagattgaaacccccaaacaatccttctg 578
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gattgagggtagattgaaacccccaaacaatccttctg 778


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space:   549824
Effective search space used:   549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no399_p13.g1 MSMg01no399_p13.g1 CHROMAT_FILE:
MSMg01no399_p13.g1 PHD_FILE: MSMg01no399_p13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:07 2005
         (244 letters)



>mm_chr12_113681850_113682493
          Length = 644

 Score =  472 bits (244), Expect = e-138
 Identities = 244/244 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattccagggaaggagtgatgggcacagagctcctctgcttcccactcaggtgctgcata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 aattccagggaaggagtgatgggcacagagctcctctgcttcccactcaggtgctgcata 259

                                                                       
Query: 61  gggaccgctcatagctgtcatctcctgtgacatggttctagtttcatttttgtcccagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 gggaccgctcatagctgtcatctcctgtgacatggttctagtttcatttttgtcccagtg 199

                                                                       
Query: 121 acagaagcaactcaggggaggaaagggttaacttgacttgtgcttccatgctgctggtca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 acagaagcaactcaggggaggaaagggttaacttgacttgtgcttccatgctgctggtca 139

                                                                       
Query: 181 ctgtttcagggacccaagcagccagtcacatcacatccacagtcaagaggagaagaggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 ctgtttcagggacccaagcagccagtcacatcacatccacagtcaagaggagaagaggaa 79

               
Query: 241 cgca 244
           ||||
Sbjct: 78  cgca 75


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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