ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTAGCAGATCCGAAAAGTTACTTTGCAGATAAAGAAGAAGATTCAGG
TAAACACAGCCTTTTCCATTACACATACGGTATAACCACCAGATTTGGAG
AGTCATTCTCCGTTTTAGCAAATCATATTAATTCCTATTTCAAAAGCAAG
GGAAAAATGTCTCAAACAAAGGAAGATAAACAGCTTCAGGACAAGCCAGA
CCTTGAAGAAAGGAAATCCAGTTCTCCAGGCCCTGACACCGAGGCAGACG
GGCCAGACTCGGAATCTCCCCTAGATGTTAAAGACAAACTTTCCAGCCCG
ACCCAGATGCCTGAGGCTCACCCAGTGTCTGCAAAACAAAGTATTGCTAA
CTTCCTTTCTCGTCCCACTGAAGGCGTACAAGCCTTAGTCGGTGGTTACA
TTGGTGGACTTGTACCCAAATTAAAGTCTGATCCCAAGAGTCCGCCCGAA
GAACAGGAAGTGTCTGCTAAAACAGAGCAGGCTGTTAGCAAAGACAAGAA
GGCAGAGGAGAAAAAGCGTGTGCTACTTCAGCAAGAAAAGGCAAGTTGTC
TTTCAGTGTGGGCTTAAGAAATGTTAACCATTTGTAGAGTAACTCCATCT
TCTAATCATGGTTCATATCCCCTTACAGATTATTGCAAGAGTGAGTATTG
ATAACAGAACTCGAGCCTTAATTCAGGCCTTTAGAAAGAAAAGCTGACCC
AAAGGTCTTGTATTACTAGGGTTGAAAAACTG

ATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTTGACCCAATGCAAAGGCAAGGATCT
ACTCTACAAAAGGCAAGAGAGTTCACCTGCAGTTCTAGCCTCAGAAAGCA
GAGGGAACCCCAGAGCAAGTTGAAAGTGACACTATCCAGATTAGAAAGCT
CTAGGTTTGATTCAAAGATCCAACCTCAAAAACAGTAAGGTGCAGAGTCA
TTGACAAAGATTCTTAACTGTATGACATTTCCCCAATCAGGAATTTGTCA
TAATATGCAGCTCTGTTTCGCCTATTTAGGCAGAACATACTGAATATAAT
TAAACCTTACATTAAACTCAGTCCTCGTTGATGATGTGTCTATGTCTACA
ATCAACAGAATCTGATTTCATTTTTAAAACTTGGTATATGCAGAACAGCA
GAGCAACGAAGATTTAAGCACTCATGAATGTTAATAGAAACCAAGTAACT
TTATTTTGCTTAGGGGAGAAAAAAGGCTAAAGGAAACTAGTTTAAGGTCG
ACGAATATATTCTAAATATTTTTTANAGCATACGAGTGAGGAATGATTTT
TCGAGTTCACTTGGTACGCACACACCGCGTCCCTCTCGGCGAGAGAGAGC
GAGAGAGAGCGAGAGTGATAATAGCGACGCGATCGATGTTGGTTTCCCGA
TATACGCTTCTTTCTTTCGTTCGTTTTTTTTTACGTTTTATCGTTTCTAT
TTCGCTTTTTTTTTTTATTCTTCGTC

Query= MSMg01no400_c02.b1 MSMg01no400_c02.b1 CHROMAT_FILE:
MSMg01no400_c02.b1 PHD_FILE: MSMg01no400_c02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:20 2005
         (556 letters)



>mm_chr12_45383944_45384899
          Length = 956

 Score = 1021 bits (528), Expect = 0.0
 Identities = 546/552 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttagcagatccgaaaagttactttgcagataaagaagaagattcaggtaaaca 64
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttagcagaacagaaaagttactttgcagataaagaagaagattcaggtaaaca 264

                                                                       
Query: 65  cagccttttccattacacatacggtataaccaccagatttggagagtcattctccgtttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cagccttttccattacacatacggtataaccaccagatttggagagtcattctccgtttt 324

                                                                       
Query: 125 agcaaatcatattaattcctatttcaaaagcaagggaaaaatgtctcaaacaaaggaaga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agcaaatcatattaattcctatttcaaaagcaagggaaaaatgtctcaaacaaaggaaga 384

                                                                       
Query: 185 taaacagcttcaggacaagccagaccttgaagaaaggaaatccagttctccaggccctga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taaacagcttcaggacaagccagaccttgaagaaaggaaatccagttctccaggccctga 444

                                                                       
Query: 245 caccgaggcagacgggccagactcggaatctcccctagatgttaaagacaaactttccag 304
           ||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 445 caccgtggcagacaggccagactcggaatctcccctagaagttaaagacaaactttccag 504

                                                                       
Query: 305 cccgacccagatgcctgaggctcacccagtgtctgcaaaacaaagtattgctaacttcct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cccgacccagatgcctgaggctcacccagtgtctgcaaaacaaagtattgctaacttcct 564

                                                                       
Query: 365 ttctcgtcccactgaaggcgtacaagccttagtcggtggttacattggtggacttgtacc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttctcgtcccactgaaggcgtacaagccttagtcggtggttacattggtggacttgtacc 624

                                                                       
Query: 425 caaattaaagtctgatcccaagagtccgcccgaagaacaggaagtgtctgctaaaacaga 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 caaattaaagtctgatcccaagagtccgcccgaagaacaggaagtgtctgctaaaacaga 684

                                                                       
Query: 485 gcaggctgttagcaaagacaagaaggcagaggagaaaaagcgtgtgctacttcagcaaga 544
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gcaggctgttaacaaagacaagaaggcagaggagaaaaagcgtgtgctacttcagcaaga 744

                       
Query: 545 aaaggcaagttg 556
           ||||||||||||
Sbjct: 745 aaaggcaagttg 756


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space:   516516
Effective search space used:   516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no400_c02.g1 MSMg01no400_c02.g1 CHROMAT_FILE:
MSMg01no400_c02.g1 PHD_FILE: MSMg01no400_c02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:20 2005
         (378 letters)



>mm_chr12_45552424_45553201
          Length = 778

 Score =  706 bits (365), Expect = 0.0
 Identities = 374/377 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttgacccaatgcaaaggcaaggatctactctacaaaaggcaagagagttcacctgcagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 cttgacccaatgcaaaggcaaggatctactctacaaaaggcaagagagttcacctgcagt 518

                                                                       
Query: 61  tctagcctcagaaagcagagggaaccccagagcaagttgaaagtgacactatccagatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 tctagcctcagaaagcagagggaaccccagagcaagttgaaagtgacactatccagatta 458

                                                                       
Query: 121 gaaagctctaggtttgattcaaagatccaacctcaaaaacagtaaggtgcagagtcattg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 gaaagctctaggtttgattcaaagatccaacctcaaaaacagtaaggtgcagagtcattg 398

                                                                       
Query: 181 acaaagattcttaactgtatgacatttccccaatcaggaatttgtcataatatgcagctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 acaaagattcttaactgtatgacatttccccaatcaggaatttgtcataatatgcagctc 338

                                                                       
Query: 241 tgtttcgcctatttaggcagaacatactgaatataattaaaccttacattaaactcagtc 300
           |||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tgtttcgcctaaaaaggcagaacatactgaatataattaaaccttacattaaactcagtc 278

                                                                       
Query: 301 ctcgttgatgatgtgtctatgtctacaatcaacagaatctgatttcatttttaaaacttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 ctcgttgatgatgtgtctatgtctacaatcaacagaatctgatttcatttttaaaacttg 218

                            
Query: 361 gtatatgcagaacagca 377
           |||||||||||||||||
Sbjct: 217 gtatatgcagaacagca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 778
Length adjustment: 9
Effective length of query: 369
Effective length of database: 769
Effective search space:   283761
Effective search space used:   283761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)