BAC Information

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BAC

Clone NameMSMg01-400D11
Chromosome12 (Build37)
Map Location 27,874,543 - 27,875,037
singlet/doubletsinglet
Overlap genenone
Upstream geneRnf144, Rsad2, Tyki, LOC668731, 1700020D12Rik
Downstream geneSox11, LOC100043009, LOC669327
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-400D11.T7 (MSMg01no400_d11.b1)MSMg01-400D11.TJ (MSMg01no400_d11.g1)
ACCAG499892AG499893
length775812
length of high quality
(start - end)
495 (72 - 566)42 (172 - 213)
definitionCHROMAT_FILE: MSMg01no400_d11.b1 PHD_FILE: MSMg01no400_d11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:27 2005CHROMAT_FILE: MSMg01no400_d11.g1 PHD_FILE: MSMg01no400_d11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTAGTCCTACATGTCACNANANGANTCACTATTTCAAGAAGATCCGCGGA
ATTCAGGGACTTACCCTAACAGGCTGTCTACCTAGTTCCCCCAAAAAGTA
ATATTTGAAAATAGGTAGAAATATGGGGGTGAGGAGCTTGTTTTATGTTC
TATCCTCAACAATGATAAAAATATATTGGGGATAATTGTAGTATATATGG
ACAATGAAAACACAAAACCGGAAGCTGATCCTTGATGGAAAGTTAGTGAG
ATGAATAACCTAAGACCACTCTTATCTCTGATATTTTAAAAAGTAATGAG
ATCCCTTCTTCTGAAAGAGATTTTTTTATTTTTTAAAGCAAGAAAGCCCC
ACTTTAGACTAATTTAAAGATGGGAGTGTGGGGATCCACCAGAATACAGT
AAAACCCATTGCCTATTGCATCAAGGACTTGGAAGATTGTTAATCTATCT
GTCTTCTTTCTGGAGTATCTCACATTGCCACTACAGTGGCCACCTCTCTG
CATGTCTAGAACTTTCTGCACTCTCTGTGGGGTCAGCTAGTGATGGATGC
AGCTTCCAAGTCCCAAGGTGTGCACAGAGGCCTGGTGGCAGTTAAATCAA
CATCACCATTGTGCCGCTCAGGAGATATTGCCAGTCCTTCGGNATAAAGT
TATACCGAAGATTCTTTTTTGGAAATAAGGTTTTGACTAATGCTCTGCCT
TTAATAAATACCTTTCTGATGTGTGGCTTGGTTAGTTGCTTATTTGNCTG
GATTTTCCAGAAAGAATCTTTCTTN
AATGTAGGGGGAAGCCAGAGGGGGGCGGCTTTCACACCGGGGGNGAANNA
NAGAAGTTCTCAAAAAATTGGAGNGAGNCAACACCGGCCTGGGCCTGCCC
ACACACGCCATGTTCACCTAGATGAAATCATCCAGTTGTGGACTCGCGGG
GTAGCACTGGAGGGGGGGGGTACATTCAAGACATATACCAAATATTTGAG
GTCATTTTTAGCAAATGGGCAAAATGACTCTCAGGAGACATCAGGCTTCT
GTGTCTAACCTCGAAGATTCTTCACAGAGAGCGGAAACGGATATCTGCGA
TTAGAAAACGGCTTTTTTTTTTTGNAGACAACAGCGCGGCCGGGGCGCGA
CCCACTGACAGGACACGCGCCAGGGCCTCCATTCCCCGACAGAGGAAGTC
GACAGTGTTGACCAACCTAGTATCTATACGGTCCGGCCCGGGTGTCACTG
TACAGACTACTTCACAGCAGGCAGGATATCCTTGTAGACTGGCCTCTTCA
CAGACACTTGGAACCCAGTGGTTTCTAGAGGCTTCGTTCAGGCATATTCC
CGTCCGAATGTGTCCCTCCATAGCCAAGCGCCATCTTGCACGGCCGCCTT
GCCAATCTTCCGCCTTTTTGAACCGTGTAAGAGATCCCCCTCGCCCTCAC
CTAATCGGCCCGGCCCGAGGCCCCCCGTTGCTTTTTAATATACAGCCGTG
CGGGCCCTCCCTCTAAGCACTATTTTTTTGCCTCAACAATTCTTTGGACT
CCCCTCACTTGTTTCCCCTCCTCTCTCCCTCTGTAACTTTATTTCTCCTC
CCCCACAGCTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no400_d11.b1 MSMg01no400_d11.b1 CHROMAT_FILE:
MSMg01no400_d11.b1 PHD_FILE: MSMg01no400_d11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:27 2005
         (495 letters)



>mm_chr12_27874343_27875237
          Length = 895

 Score =  915 bits (473), Expect = 0.0
 Identities = 489/501 (97%), Gaps = 12/501 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggctgtctacctagttcccccaaaaagtaatatttgaaaataggtagaaatatgggggtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggctgtctacctagttcccccaaaaagtaatatttgaaaataggtagaaatatgggggtg 260

                                                                       
Query: 61  aggagcttgttttatgttctatcctcaacaatgataaaaatatattggggataattgtag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggagcttgttttatgttctatcctcaacaatgataaaaatatattggggataattgtag 320

                                                                       
Query: 121 tatatatggacaatgaaaacacaaaaccggaagctgatccttgatggaaagttagtgaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatatatggacaatgaaaacacaaaaccggaagctgatccttgatggaaagttagtgaga 380

                                                                       
Query: 181 tgaataacctaagaccactcttatctctgatattttaaaaagtaatgagatcccttcttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaataacctaagaccactcttatctctgatattttaaaaagtaatgagatcccttcttc 440

                                                                       
Query: 241 tgaaagaga------tttttttattttttaaagcaagaaagccccactttagactaattt 294
           |||||||||      |      ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaaagagaaaacaat------attttttaaagcaagaaagccccactttagactaattt 494

                                                                       
Query: 295 aaagatgggagtgtggggatccaccagaatacagtaaaacccattgcctattgcatcaag 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 aaagatgggagtgtggggatccaccagaatacagtaaaacccattgcctattgcatcaag 554

                                                                       
Query: 355 gacttggaagattgttaatctatctgtcttctttctggagtatctcacattgccactaca 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 gacttggaagattgttaatctatctgtcttctttctggagtatctcacattgccactaca 614

                                                                       
Query: 415 gtggccacctctctgcatgtctagaactttctgcactctctgtggggtcagctagtgatg 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 gtggccacctctctgcatgtctagaactttctgcactctctgtggggtcagctagtgatg 674

                                
Query: 475 gatgcagcttccaagtcccaa 495
           |||||||||||||||||||||
Sbjct: 675 gatgcagcttccaagtcccaa 695


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space:   429225
Effective search space used:   429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)