BAC Information

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BAC

Clone NameMSMg01-400F04
Chromosome12 (Build37)
Map Location 29,404,392 - 29,404,825
singlet/doubletsinglet
Overlap geneTtc15
Upstream geneLOC669327, 1110015M06Rik, Allc, Colec11, Rps7, Rnaseh1, Adi1
Downstream geneTssc1, 4833405L11Rik, LOC629608, Myt1l, LOC100043496
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-400F04.T7 (MSMg01no400_f04.b1)MSMg01-400F04.TJ (MSMg01no400_f04.g1)
ACCAG499974AG499975
length854776
length of high quality
(start - end)
252 (45 - 296)434 (75 - 508)
definitionCHROMAT_FILE: MSMg01no400_f04.b1 PHD_FILE: MSMg01no400_f04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:35 2005CHROMAT_FILE: MSMg01no400_f04.g1 PHD_FILE: MSMg01no400_f04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGGCAAGAATTGCTTGGGTGAGAAGATGTGGCTAAGTTCATAGAGG
ACTCGGTAGTGTGTGTATGAAACCCTGGGTTTGGGCACCAGCACCTCAAA
ACGGGAATGGTGGTGTATGACTACAATCCTAGCATTTGACATAAAAAGTT
CATGATTATCCTTGGCTACACAGTAGGTATAGGGCAAGCCTGGGCTGCAT
ATGATCCTGGAAAGAGGGGAGGGGATAGAGGAAGTGGAAGGGGTTATNCT
TTTNTTTTTTTTCGTNNNCTNTTTTTTTTTTTTTTCNNTNTATTTTTATC
TTCTATTAATAATTCTACTTTTCTTTCCCTCCTTCTCCTCTTCGCTCCTC
CTTATCTTCTCCTTTTTCCCTTCTCCCCCACTTTACCCCTCTATTTTTCT
TCTGCTCCCTCCTGTATCTGTCTTGTTCTTCCTTTCCCTCTAGCTATTCC
CCATGTTCCTTTTTCCCCTTCTTTACAGTACTCTCTGCTTTTCTACCTAC
TCTCACTTCCCCCTTTCCTCCCCCATTCCACCAAATTCTCCTCTCCCCCT
CCCCCCTTCTATGTCGCTCTCCCTCTATATTCTTCTCCACCTATTCACCC
TAATTAACCACTTTAACCTCCTTAACGCCACCTTATGCCGATCCTTTCGC
CATAATGTTGTCGTTCGTCTATACTCCTTCCCTCCTCCTTATATACTATC
ACTTCCGCTTATCCCCTATGTCCATTTATTATCACTTTCACCCTTCTATT
CTTCTTCCTCCCTTTTTCTTTCCCCTTTTATTTCTTCGCTCTTTCTCCTC
ACAC
CAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTCCTGGGCCCCAGCCCATGCGATG
GTGCTGCTCACATTTAGGGTGGGTCCTCCCATGTCAGTTCAGCACTTTGA
GAAATGTCTTTACAGACCCAGAGTTACATCTCCTGGATGATTCCAGTCTA
GTCAAGTTGTTAATGAAGAGGAACAGCCCCTGTCATATGCAAAGGTCTGA
CAGGTTAAGGGCGTCACTGTGTATGGGAACTGGGGGGACAAGGATTCTAG
CTAGTCTCCTTTTCTTGATTTCTCGGATCATCAGGAGACAACTGATTTTT
CTCAGAAGAATAGCTATTTTCCTGAAAGCATAAGAAATGTTTCCTCAGTC
CATCTCGGCCGCACTCTGCCTTAACCGCAAGGTTAGCAACTAGTTTCAAT
GGGGTTTTGTCTGTGACCAACAAAGCATAGAATGTGAACCACAGAGGCTC
ATCTCTCACTGGCGCCAGGCTACTAAACCCATAGTCACATAGCTGCACGA
AGGCTCTGTGCTATTCCTGGTGACATTCTCGAGAATTGCAGATGCAAGAT
TACTATCTCATCCCAGTAGCGTCTGAGCACCGGACCGCGTGTGGGAAAGC
GCAACGCAGTGGTTGTTGTATCATGGAAAAATACGTCATCTTCTGGGGGC
CCGGGCTTTCTGGCCCCCCTGTGTTGTTTCTCCCCCGCAATAGCCTGTTT
GTTCTACATACTTCAAAATCGCCCGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no400_f04.g1 MSMg01no400_f04.g1 CHROMAT_FILE:
MSMg01no400_f04.g1 PHD_FILE: MSMg01no400_f04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:35 2005
         (434 letters)



>mm_chr12_29404047_29404880
          Length = 834

 Score =  832 bits (430), Expect = 0.0
 Identities = 433/434 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actcctgggccccagcccatgcgatggtgctgctcacatttagggtgggtcctcccatgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 actcctgggccccagcccatgcgatggtgctgctcacatttagggtgggtcctcccatgt 720

                                                                       
Query: 61  cagttcagcactttgagaaatgtctttacagacccagagttacatctcctggatgattcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 cagttcagcactttgagaaatgtctttacagacccagagttacatctcctggatgattcc 660

                                                                       
Query: 121 agtctagtcaagttgttaatgaagaggaacagcccctgtcatatgcaaaggtctgacagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 agtctagtcaagttgttaatgaagaggaacagcccctgtcatatgcaaaggtctgacagg 600

                                                                       
Query: 181 ttaagggcgtcactgtgtatgggaactggggggacaaggattctagctagtctccttttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 ttaagggcgtcactgtgtatgggaactggggggacaaggattctagctagtctccttttc 540

                                                                       
Query: 241 ttgatttctcggatcatcaggagacaactgatttttctcagaagaatagctattttcctg 300
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 539 ttgatttctcggatcatcaggagacaactgatttttctcagaagagtagctattttcctg 480

                                                                       
Query: 301 aaagcataagaaatgtttcctcagtccatctcggccgcactctgccttaaccgcaaggtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 aaagcataagaaatgtttcctcagtccatctcggccgcactctgccttaaccgcaaggtt 420

                                                                       
Query: 361 agcaactagtttcaatggggttttgtctgtgaccaacaaagcatagaatgtgaaccacag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 agcaactagtttcaatggggttttgtctgtgaccaacaaagcatagaatgtgaaccacag 360

                         
Query: 421 aggctcatctctca 434
           ||||||||||||||
Sbjct: 359 aggctcatctctca 346


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 834
Length adjustment: 9
Effective length of query: 425
Effective length of database: 825
Effective search space:   350625
Effective search space used:   350625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)