BAC Information

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BAC

Clone NameMSMg01-400K13
Chromosome12 (Build37)
Map Location 79,110,021 - 79,110,254
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041765, LOC100041772, Fut8, LOC230765, LOC666659
Downstream geneEG626215, Gphn, 4921509E07Rik, Mpp5, Atp6v1d, LOC100041878, Eif2s1, Plek2, 6330442E10Rik, Plekhh1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-400K13.T7 (MSMg01no400_k13.b1)MSMg01-400K13.TJ (MSMg01no400_k13.g1)
ACCAG500229AG500230
length7481,636
length of high quality
(start - end)
244 (80 - 323)---
definitionCHROMAT_FILE: MSMg01no400_k13.b1 PHD_FILE: MSMg01no400_k13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:02 2005CHROMAT_FILE: MSMg01no400_k13.g1 PHD_FILE: MSMg01no400_k13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNAAAATCTTTACTCGTGGCGCTANANGANTCACTATTTCGAGAGTATC
CGCGGAATTCATCTGGTTACACGCTAATGAAAGAGCTAGTGGACTGTGGT
TCTTCAACAAGTGTTGAGTCTCTAATGAATAGAGTTGAAGGAGGAGGGAT
GTTGATACAGGGCTGAGGATGAGACTGGAGAGACAGACATGGAGAATAAG
AATAGTGTGTCTTAACTGAGTCCCAACCAGGTGTGGCCACCATGAGTCCC
ACGTAGGGTGTGTTTTTAGATATAAGCTTCTGATACAAAGGAATAAGAAT
GGGCTAGAGGGGAAGAACAAGAGTATTCTTCTTTAGAGTCCTCAGCAAAG
AGCTAAACAGAATCCTCACCAAGAGGAGGATCTACTCTATAATAGCTACC
ATGGTCTTTACTCATTCCAACCTCTACTTACTCCTGGTACAGTGATTTTC
TTTTCCTATTTTATTCATTTACCATAGTGTTTAAATTTTATGCATATTTA
TTACTTTTACATTTAAAAGTTAAAGCTATTTCTTAGATACCTGGTTAAGC
TGATATAAATTCTTAGGAGCATTTGGCTTATCTCCCTAACCTAGCATTAC
ATTGGAATGCTATGACTTGAAAGTGTGTATTACCCAAAGTTCTAAGAGAA
CTGCTAGAATTGTTTTCTTCATTTTCGGGGCATTCCTACTTTTTCATTGG
AAAGTAATTATCTGTATCTAGAATGGCTTTCATTTTCGACGTAGGAAA
ATCCTGTTCTGGGCAGTTGTGCGCGCGANGACNCCATGTACAACATACAC
GACTCTACNACATAGCATATTGATAGAGTGTACGATATTAGTTATTATTA
TCTATCTCATTATCATATAATATCAGTGAATGACATACATATCTACTAAT
GATATCAGTTACCACGTAGCGTAAGACAGACATCACTAANCACCATTGTG
TATACTATACTCTATTATCTACGTTAGCTCTAGGTACTGCATGCATGACA
TCATCACATACGCACCTTCATAGCGTCTGCAGACGTATATTCAATCATAC
TGCGCGTCTTATGTNGTAGCGCCGACCGCATGCATGACACTCNACTGTAT
AGAGACGATCATGACTATATGNTGAGCATATGTCGGAGCACGACATTATA
CATATCTGNCTGCTGAAAAGTGCTTGACACAATATCGTAAGATATAATGA
CATGTGATGTGTCTCATACAGATATGATAAATCATACAAGATGAGGTGCT
GTCATCTGGCGAAACGACAGAATCGAGACACATATAGCATCTATATCATA
GTCGGACACACACCAGTAGTATTGCGCCTCTCTCATCACATATAGTGCTN
GCACGGATAATATAAGTGTGATCCTGGACCATTGATCCCTACACATAAAG
ATACGTCATCAATCGTAGTGATAGCGGCTCGNGTGTGCGTGCCGTGTGCC
TTCGCCTTCGTGTCGCTGTGCTCTACGACTCAGCACACATCGCACTACGA
CACGTGTGCAGCGCATAAGATGCGATACGTGATCGGTTGGACACTATGCA
GCGTGAATCCGTGTATTATAACATCATTCTGTGTAGTATGCAACATNATT
CAACCACGTGCTGTGCATCGACAAGCGAGACATAGTAGACGTAGCAGGTC
GATAACAGCATCTGTTATGGCCAAATGAGCAGATGTGCAGAAAGCGTTGC
GTATCGTTGGAATGTAGTGCTCGATCACTGAGCATGATGATGCGTGCGAC
TGTTCTCAGGCACGATACGATGTGCGAAGTAGAATAGTCGNATCGTATAT
ACGTGCGGCATATATGACTCGCGGTACGCTCGCGCGCATATNCNATAGCC
TAGCTANCGNTTATACTNTTATGCGCGAGTCTNCTGCGTAGCGCGTGGTT
GTCAGANTATGATATGNANCGCGTCNGANCGATGNCTCTGACTGTGAGGA
TGTGATAGTGTGAGCGTGTAGCGTATCAGTGAGANCGTGTGTGCGTCACA
GGACGTGTCATGCAGTNATGCATTGACTCTTACACTCAACTGNGTGCATG
CGTCTAGTACGACAGTCATCGTATGACTGTGTTGAGTCTGTGTGTGGACG
CGTAGTGATGACACATTACACGGACGATACGNTATGTCACGTCGATACAG
CGCGATCTACGTGGACGANCGTANTGNGTGATATGACTACGACGTGTGAC
TCAACGACAGTTATACGTAGTNNAGCAGCATTTCGGTCGAGTATCGTCGC
ATGCCNAGTCGTCACAATGAGCGTCATACTGATATATACGCGTCANTACG
TTTGTCGAACGAGAATCTGACTGAGAGTGTAGTGATNTTNGAAGGCGTCA
CGACGTATGAATATGCGAGTCAGGNAGGACATTGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no400_k13.b1 MSMg01no400_k13.b1 CHROMAT_FILE:
MSMg01no400_k13.b1 PHD_FILE: MSMg01no400_k13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:02 2005
         (244 letters)



>mm_chr12_79109906_79110552
          Length = 647

 Score =  406 bits (210), Expect = e-118
 Identities = 227/234 (97%), Gaps = 3/234 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaagagctagtggactgtggttcttcaacaagtgttgagtctctaatgaatagagttga- 59
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 349 aaagagctagcggactgtggttcttcaacaagtgttgagtctctaatgaatagagttgaa 290

                                                                       
Query: 60  --aggaggagggatgttgatacagggctgaggatgagactggagagacagacatggagaa 117
             |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 289 ggaggaggagggatgttgatacagggctgagggtgagactggagagacagacatggagaa 230

                                                                       
Query: 118 taagaatagtgtgtcttaactgagtcccaaccaggtgtggccaccatgagtcccacgtag 177
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 229 taagaatagtgtgtcttaactgagtcccagccaggtgtggccaccatgagtcccacgtag 170

                                                                 
Query: 178 ggtgtgtttttagatataagcttctgatacaaaggaataagaatgggctagagg 231
           || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 ggggtgtttttagatataagcttctgatacaaaggaataagaatgggctagagg 116


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 647
Length adjustment: 9
Effective length of query: 235
Effective length of database: 638
Effective search space:   149930
Effective search space used:   149930
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)