BAC Information

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BAC

Clone NameMSMg01-401E01
Chromosome12 (Build37)
Map Location 95,995,746 - 95,995,920
singlet/doubletsinglet
Overlap genenone
Upstream gene2610022K04Rik-ps, EG633639
Downstream geneLOC217786, LOC100039603, LOC667688, Flrt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401E01.T7 (MSMg01no401_e01.b1)MSMg01-401E01.TJ (MSMg01no401_e01.g1)
ACCAG500682AG500683
length751749
length of high quality
(start - end)
175 (72 - 246)560 (81 - 640)
definitionCHROMAT_FILE: MSMg01no401_e01.b1 PHD_FILE: MSMg01no401_e01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:50 2005CHROMAT_FILE: MSMg01no401_e01.g1 PHD_FILE: MSMg01no401_e01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATCCTCTGTGGCCGCTATACGACTCACTATTTCCAGAGGATCCGCGG
AATTCCCAGTTTCCCCACTTGTTTGAACACCCATAAGATAGGGGCTTTTT
GTGCCAATGTCCTCCTAGGAACAGAGGACTGAACTGTAAAACTGTCACTA
ACTCCTTTGGAGGAGACACCTGCCAATGTTGAGGCTCCTACCATAGAGAC
TCTGAACACCCTGCCTCTATCTTCCCTGTTGAACAAGCTGGAAGATTCTG
TGACACCGATCATAATGAGTGTGGTTCTTGATCTTACCATAATGTTGCTG
TGCAGTAGGCTGTTTTTATTGGTTATTTCTGCTTCAGTGTGTCTGGATAC
CAATACTAGCATTGCCAATTGCAAGTGAATTAATGTGTTTCTTGATCCCT
GCTTGATTGAGGTAGTATGCCTTAATAATATAGGAAGAAACATATGTGTC
TGTCCGCAATAGTATTCTAGCGTAAACTGTTAGTTGGATATTGATGAACG
TGTGTTCCAGCTGTGTCTACATGGTGCCATGTGTCAGTATGCTTGGATAG
ATTACACTTTGACTATGCACATGAATTCACTGAATACCACCGTGACTCAA
CTTTGATGAATGTATCAGCCATATACATCTCTATGCATGTCCTTTGTATG
TTTTGAGTTTATAACCTCCACTGTTCCCGTATGTTCATTGTCTCTACTGG
TATTCTCCCGCGACCCCTTTTTTTTTTCCCCTCTTTTCCTCCCTTTTTCC
C
TTCCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAAT
GGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAA
TGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCT
AAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAG
AGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCT
GGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCAGAG
GATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGG
TAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAG
CCAGAAGCTGGAAGGAACCCTGATGCCCCTCAACAGAGGAATGGATACAG
AAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAA
TGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCC
TGAGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTG
ATAAGTGGATATTAGTCCAAAACCTAGGATATCCAAGATATAAGATACTA
TTTTCTTAAACACATGAAACTCAAGAAAAATGAAGACTGAAGTGTGTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_e01.b1 MSMg01no401_e01.b1 CHROMAT_FILE:
MSMg01no401_e01.b1 PHD_FILE: MSMg01no401_e01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:50 2005
         (175 letters)



>mm_chr12_95995546_95996120
          Length = 575

 Score =  331 bits (171), Expect = 2e-95
 Identities = 174/175 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgaacacccataagataggggctttttgtgccaatgtcctcctaggaacagaggactg 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgaacacccagaagataggggctttttgtgccaatgtcctcctaggaacagaggactg 260

                                                                       
Query: 61  aactgtaaaactgtcactaactcctttggaggagacacctgccaatgttgaggctcctac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aactgtaaaactgtcactaactcctttggaggagacacctgccaatgttgaggctcctac 320

                                                                  
Query: 121 catagagactctgaacaccctgcctctatcttccctgttgaacaagctggaagat 175
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catagagactctgaacaccctgcctctatcttccctgttgaacaagctggaagat 375


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 175
Length of database: 575
Length adjustment: 8
Effective length of query: 167
Effective length of database: 567
Effective search space:    94689
Effective search space used:    94689
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)