BAC Information

Click to search

BAC

Clone NameMSMg01-401F17
Chromosome12 (Build37)
Map Location 54,769,783 - 54,770,184
singlet/doubletsinglet
Overlap geneNpas3
Upstream geneAkap6
Downstream geneEgln3, EG665239, EG665251, LOC665256, LOC621363, 1110002B05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401F17.T7 (MSMg01no401_f17.b1)MSMg01-401F17.TJ (MSMg01no401_f17.g1)
ACCAG500762AG500763
length810764
length of high quality
(start - end)
42 (74 - 115)404 (75 - 478)
definitionCHROMAT_FILE: MSMg01no401_f17.b1 PHD_FILE: MSMg01no401_f17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:57 2005CHROMAT_FILE: MSMg01no401_f17.g1 PHD_FILE: MSMg01no401_f17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCATCTTTXXXXXXXXXXXXXXXXXXXXXXCTATTTCATAACGCTCCGCG
GAATTCTAAATCTTCTGACTTTATTATTTTGAGAGGCCCTTGGTCCTGTG
AAGGCTCTATGCCCCAGTGTACGGGAATGCCAGGGTCAGGAAGTGGGAGT
GAGTGGTCTGGAGCAGGGTGAGGGGTGAGGTCATAGGCGTCCCCTCCTTT
TCCTTCCCTTTTCCTCCTCTTTCCTTTTCCTCTTTCTCCCCTCTCCTTTT
TTTTTTTTCCTCCCTTTCCCCCCTCCTTCCTCTTTTTTCCTCTTCCCTCC
CCCCTTCTTTTCCCCCCCTCCTCTTGTGTCTTCTCCCCCCTCTTTTCCCC
CCTTTCTCCTTCTTTCTCTTCCCCTCTCCCTCTTCTTTTTTCCTTCCTTC
TTTTTTCTCTCCTTCCTCCTTTTCTTCCCCCCTTTTCTTCTCTTTTTCTT
CTTCTCCCTTTCCCCCTCTTTCCCCCTTTTCCTCTCCTTCCTTCTCTTTT
CTTTTCCCTTTTCCCCTCCTTCTCCCCTTTTTTCTCTCCCCCCCCCCTTT
TCTTTTCCTTTTTTTCCCCTTTCCTTTTCTTTTTCTCCCCTTTTTCCCCT
TTCTCCTCCCTTTTCTTCTTTTTTTTTCCCCCTCCTTTCTTTTCTCTCTT
CTCTTCCCTCTTCTTTTCCTTTCCCTTCCCTTTCTCTTCTCCCCTCTTTT
TCCTTTCTTCCTTTCTTTTTCTCTCTCTTTCCCTTCTCCTCTCCTTTTTT
CCCCTCCTCCCTTTCTTTTTTCCCTTTTTTCCCTTTTTCCCCTTCTTCCC
TTTTCCCCTT
NTTCGATATAGTGGGTAGGNCTGGCGGNCGCCTGTTTCACAAATTTAGGT
GAACTATAGAAGTACCAGCGAAATTCTGTTTATTTAATTATCCAATGGAA
CTTTTTGTCGTTTTCTTATAATAAAAAGTGTAGATAACCCCCAGTGGCAA
GTTCTGACCACCGATCACTCCCTCAAATTCCCACATTAGTTTAGTTTACC
CTTGCTAATGTGTCCTCACGGTTGCATGGCTTTCTGAAGATGTTCTTGTG
ATATGGGTAAAAGATGCAGATGGGGATGTCTGGTGTTCTGAGTCCTTCCA
GTTTATCACCAGTGTTCTGTTTTTTCTGGGTGTCCTCTAGCCTTTACTAA
GTACAGATGTTTTTAAGATGTGTGTTGCAGGTCTAACATGTCAACCTATG
AGGCATTGAAGCATGCTGTGGATGCATAGGATACAATCATTCTCTGAGAC
GGAATGGATTATTTTACTTTTTTGGCAAAGTGTTCACTGTTTCTCTTCAA
GAGTTGTAATGCTTTTTATATTGCTGAGATTTATCTTATTCCTTACATTC
TACTTCTGACCTCAACGCGCATTTTTTTTCACCTTAAGGAGTTCCCCAGG
TTCACTTTTACCTTCCTATGCCACTTTCTTTGTCACTGCACCCGCTCGAG
CATCACCCTTTTTTCTATGCCTTGCCTCACTTTGCCCCATTTACCTCCCC
CTTTCTCCTACTACCCCTCCCTTTTCCCCCATTTTCTTCCCTTCCTTTTT
TCTTCCCTCCCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_f17.g1 MSMg01no401_f17.g1 CHROMAT_FILE:
MSMg01no401_f17.g1 PHD_FILE: MSMg01no401_f17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:58 2005
         (404 letters)



>mm_chr12_54769583_54770387
          Length = 805

 Score =  702 bits (363), Expect = 0.0
 Identities = 392/405 (96%), Gaps = 7/405 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgtttatttaattatccaatggaactttttgtcgttttcttataataaaaagtgtaga 60
           ||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||
Sbjct: 201 tctgtttatttaattatccgatggaactttttgtctttttcttaaaataaaaagtgtaga 260

                                                                       
Query: 61  taacccccagtggcaagttctgaccaccgatcactccctcaaattcccacattagtttag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taacccccagtggcaagttctgaccaccgatcactccctcaaattcccacattagtttag 320

                                                                       
Query: 121 tttacccttgctaatgtgtcctcacggttgcatggctttctgaagatgttcttgtgatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 tttacccttgctaatgtgtcctcacggttgcatggctttctgaagatgttcttgtgagat 380

                                                                       
Query: 181 gggtaaaagatgcagatggggatgtctggtgttctgagtccttccagtttatcaccagtg 240
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggtaaacgatgcagatggggatgtctggtgttctgagtccttccagtttatcaccagtg 440

                                                                       
Query: 241 ttctg----ttttttctgggtgtcctctagcctttactaagtacagatgtttttaagatg 296
           |||||    | |   |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttctgccagtct---ctgggtgtcctctagcctttactaagtacagatgtttttaagatg 497

                                                                       
Query: 297 tgtgttgcaggtctaacatgtcaacctatgaggcattgaagcatgctgtggatgcatagg 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tgtgttgcaggtctaacatgtcaacctatgaggcattgaagcatgctgtggatgcatagg 557

                                                        
Query: 357 atacaatcattctctgagacggaatggattattttacttttttgg 401
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 atacaatcattctctgagacggaatggattattttacttttttgg 602


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 805
Length adjustment: 9
Effective length of query: 395
Effective length of database: 796
Effective search space:   314420
Effective search space used:   314420
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)