BAC Information

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BAC

Clone NameMSMg01-402D11
Chromosome12 (Build37)
Map Location 3,293,593 - 3,445,155
singlet/doubletdoublet
Overlap geneRab10, Kif3c, LOC100043040, Asxl2
Upstream geneLOC668260, LOC668262, LOC668267, LOC668270, EG668274, LOC100041946, 1700012B15Rik
Downstream geneLOC627245, Dtnb, LOC668197, Dnmt3a, LOC668289, Pomc1, C030014M07Rik, C330021A05Rik, Adcy3, Cenpo, 2410017P09Rik, Ncoa1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-402D11.T7 (MSMg01no402_d11.b1)MSMg01-402D11.TJ (MSMg01no402_d11.g1)
ACCAG501416AG501417
length747769
length of high quality
(start - end)
405 (71 - 475)239 (74 - 312)
definitionCHROMAT_FILE: MSMg01no402_d11.b1 PHD_FILE: MSMg01no402_d11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:02 2005CHROMAT_FILE: MSMg01no402_d11.g1 PHD_FILE: MSMg01no402_d11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,444,751 - 3,445,155)(3,293,593 - 3,293,831)
sequence
CTTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTATGATATACCCAACTATCAGAGCAGCTTAGAGTTAAAGTGAGAATTT
TGTAATAGTATTCGTTTTCCCATGCATTTTTATTACAAGGAGTCATAAAG
CCATCAACAATGGCCTTGCAGGTTATTTGCTTCTCAGTGATCTACAATGA
ATCTGATGCAAATTTATTAGATTCTATTGTTGCTGTTGCTGGGTATACAG
GCACTTGTTTGTACTCTCAGATTTATGAATTCTAGGCCAACATAGGCTAT
TTAGTAAATCCTGGTTTATTAAAACAAAACAAAACAGCAAGCTGGGAAAG
GTGGTATATACCTGTAATCTCATTATTTACAAGGTTCAATTTTCAGACCA
CCCTGAGTTTTTTATAGATCCTGTCTATCCCTCTCCCAAAAAAAGAAAAC
AAAAGCTATGTCTATCAATACCTAAGGGTTTGTTTCTGTTTAACTTCTTG
ACAATCCTACCAACTTTGCAGGCTTGACAACAGACTACAGCCAGTGTATG
AAAAGAGATAGGTTTAATACTGGAGCTAATCTTACAAAATCATGCTATTA
ACTTAAATAAGAAAATGTACATGTGTACTTTTGGGAGCTGATTCTCCCCT
TCCACTACTTTCCTTCATGAGAACCCAAGGTCCAAACAATGTTGTGTGAA
CCACACATACACTTTTTATCTATTAACCATCCCCCAAACCCAAAATT
CGATGCTCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGGCCAGCCTATACTATCTGTGACCCT
GTTCAAAACAAACAAAACACCTATGAGGGAGGGAGGGTGGAGGCAAAAGT
GGGAAGAATGGCAGGGAGGCTACAGAATTTTCAAAAATGCACACCTATTC
CCTAACTTAAGGGAGGTAAAATATTGTTAAAATTATGACTATAAAAGATA
AATTAATTCAATACTTGCTCTTTTGTAAGCAAGCATTTATGAGGATTTGA
ATCAGCCAAAATCAAGCTGTCTTATAATTTACTGGCTAAGTGATATAATA
TACAGGTTCTACTGTAATACTGACAGATTATGACACAGCTGAGTCATTTG
TTGTTGGATGTATTATAAAAACAATGTATCTAGAACGTAAGATTGAAATG
TACAACTATAGTCTCATACTGCCCAACATGCAGAAATATCCTCCTAGCCA
GGCAGTGCTTGGCGCAAGCCTTTAATCCCAGCACCTGTGAGGCAGATGCT
AGCTGATTTCTGATCTCGAGGCCCGCCTGTTTTACTTAGTGAGTTCCCGG
TATGTCCTGGGCTACCTCCACCAAACCCTGTCCTCGGGTGTGCCCGCGGC
TTTTTTCCCCTCCCCATTTTCTCCCCTCTTCTCATCTCTTCATTTTCCAG
TTCGCCCTCCCCCTTTCCATCCTTTTCTATTTTTATTCCCCCGCGCCTTC
CCTTCTTCCCCTTTTTCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no402_d11.b1 MSMg01no402_d11.b1 CHROMAT_FILE:
MSMg01no402_d11.b1 PHD_FILE: MSMg01no402_d11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:02 2005
         (405 letters)



>mm_chr12_3444551_3445355
          Length = 805

 Score =  745 bits (385), Expect = 0.0
 Identities = 400/405 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagagcagcttagagttaaagtgagaattttgtaatagtattcgttttcccatgcatttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 cagagcagcttagagttaaagtgagaattttgtaatagtattcgttttcccatgcatttt 546

                                                                       
Query: 61  tattacaaggagtcataaagccatcaacaatggccttgcaggttatttgcttctcagtga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 tattacaaggagtcataaagccatcaacaatggccttgcaggttatttgcttctcagtga 486

                                                                       
Query: 121 tctacaatgaatctgatgcaaatttattagattctattgttgctgttgctgggtatacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tctacaatgaatctgatgcaaatttattagattctattgttgctgttgctgggtatacag 426

                                                                       
Query: 181 gcacttgtttgtactctcagatttatgaattctaggccaacataggctatttagtaaatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 gcacttgtttgtactctcagatttatgaattctaggccaacataggctatttagtaaatc 366

                                                                       
Query: 241 ctggtttattaaaacaaaacaaaacagcaagctgggaaaggtggtatatacctgtaatct 300
           |||| | |  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ctggctgaagaaaacaaaacaaaacagcaagctgggaaaggtggtatatacctgtaatct 306

                                                                       
Query: 301 cattatttacaaggttcaattttcagaccaccctgagttttttatagatcctgtctatcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 cattatttacaaggttcaattttcagaccaccctgagttttttatagatcctgtctatcc 246

                                                        
Query: 361 ctctcccaaaaaaagaaaacaaaagctatgtctatcaatacctaa 405
           ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 245 ctctcccaaaaaaagaaaacaaaagctttgtctatcaatacctaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 805
Length adjustment: 9
Effective length of query: 396
Effective length of database: 796
Effective search space:   315216
Effective search space used:   315216
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no402_d11.g1 MSMg01no402_d11.g1 CHROMAT_FILE:
MSMg01no402_d11.g1 PHD_FILE: MSMg01no402_d11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:02 2005
         (239 letters)



>mm_chr12_3293393_3294031
          Length = 639

 Score =  455 bits (235), Expect = e-132
 Identities = 238/239 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggccagcctatactatctgtgaccctgttcaaaacaaacaaaacacctatgagggaggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 tggccagcctatactatctgtgaccctgttcaaaacaaacaaaacacatatgagggaggg 260

                                                                       
Query: 61  agggtggaggcaaaagtgggaagaatggcagggaggctacagaattttcaaaaatgcaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agggtggaggcaaaagtgggaagaatggcagggaggctacagaattttcaaaaatgcaca 320

                                                                       
Query: 121 cctattccctaacttaagggaggtaaaatattgttaaaattatgactataaaagataaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctattccctaacttaagggaggtaaaatattgttaaaattatgactataaaagataaat 380

                                                                      
Query: 181 taattcaatacttgctcttttgtaagcaagcatttatgaggatttgaatcagccaaaat 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taattcaatacttgctcttttgtaagcaagcatttatgaggatttgaatcagccaaaat 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)