BAC Information

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BAC

Clone NameMSMg01-402E10
Chromosome12 (Build37)
Map Location 67,211,094 - 67,211,490
singlet/doubletsinglet
Overlap genenone
Upstream geneFancm, C79407, Wdr20b
Downstream geneLOC100040700, EG238217, Mdga2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-402E10.T7 (MSMg01no402_e10.b1)MSMg01-402E10.TJ (MSMg01no402_e10.g1)
ACCAG501461AG501462
length764753
length of high quality
(start - end)
348 (67 - 414)397 (72 - 468)
definitionCHROMAT_FILE: MSMg01no402_e10.b1 PHD_FILE: MSMg01no402_e10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:07 2005CHROMAT_FILE: MSMg01no402_e10.g1 PHD_FILE: MSMg01no402_e10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCAACATTATCCCTCTTAAATGGTTGAGAAACAAAGAAATGTTCAACA
TCCTTAATTATCAGGGAAATGCAAATCAAAGTGATCCTGAAATTTTTACA
TCCATTAGAATGGTTAAGATAAAAAACTCAAGTGACAGCATCTGCTGGTG
AAGATGTGGAGAAAGAGGAACACTCCTCCATTGCTGGTGGGAGTGCAAAC
TTGTGCAACTACTCTGGAAATCAATCTGACAGATTTTCAGGAACCTGTGA
ATATTTCTACCTGAGGAACCAGCTATACAGCTCTGAGGCATATACCCAAA
AGATGTTCCACTATACCACAGGGACAGGCGTTCTACTATGTTCATAGCAG
CTTGTTTTATAATAACCAGATACTGGACACAATCCAGACAGATGTCCCTT
AAGAAGAATGGATAATGAAACTGTGATTCATTTACACAATGGAATGCTGC
TCAGTTTTTCTAAACAATTTACTCAGGAATTTCACAGGCCAATGTATGGA
ACTATAATATACCATTCCTGATTGAGTTAATCTCAGACACCACAATAAAT
GCCTGTTTTTGTGCTCCCCATAAGGATATTACCCATACAGTACTGGATTC
TCTATGTTATACTCTCCCATATTCTTATTAATCCTACCTCTCCTGCTAGG
TATGCTTTAATTTTCTTTTAACAATTGCCTATAATATACTGTTTTTCTCC
TAGTCTAACTCTTG
ATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCATTTTCCCATCTGAAAAATAGTCGTAG
CACGTAAAGACATGCCAAGTTCTTATCTTACATCTATTTTTTAAAAGAAT
ATTTGTGTACTATATGTGTATAAAATTAAAATTTTATAGACACTGGTAGT
TTCTATCTCTGTATTTTACTAAACTTACTTTCATAAAGATACTTTTTAAA
TGTGTCTTATATAGAAGGTCAGTGCAATTTTAATTTATATATGCATCTGA
GAATATCTTGATGATTAAGCAATGTTTGGATGAAATTTAAAATAAACAAA
TGACTTGTTATCATTTATTTTATTTAATAAATTTAGATGACTTTATTTTA
ATAAAATCAATTTGATCTGTAGTAAAGATATTATATATTCTGGTTCATTA
TCAACAATAAATAAAATGTTTTATAAATGAAGTGTAAATGAAAATCTATG
GAGTTAAAATATTTTCATCAAAATATAAGTCAATGCAAATCTTTCTAATG
TTTAAATCATACCTTTGGGGTATTTTTTCTTAGGTATTCTAAATCTCCCA
TTACAACAAAATTAAAATACTAATTACCGCTAATCCATCTTCAATCTCCC
ACACAAACATTACAATACAACTAAGTTATTTATGTATTTCTGGAAATTTT
AAAAAACAATCTATTTTGTAATTTCCAGCAACTTAACTCTCCGGAAATTT
GCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no402_e10.g1 MSMg01no402_e10.g1 CHROMAT_FILE:
MSMg01no402_e10.g1 PHD_FILE: MSMg01no402_e10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:07 2005
         (397 letters)



>mm_chr12_67210894_67211690
          Length = 797

 Score =  729 bits (377), Expect = 0.0
 Identities = 392/397 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcattttcccatctgaaaaatagtcgtagcacgtaaagacatgccaagttcttatcttac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcattttcccatctgaaaaatagtcgtagcacgtaaagacatgccaagttcttatcttac 260

                                                                       
Query: 61  atctattttttaaaagaatatttgtgtactatatgtgtataaaattaaaattttatagac 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atctatttttaaaaagaatatttgtgtactatatgtgtataaaattaaaattttatagac 320

                                                                       
Query: 121 actggtagtttctatctctgtattttactaaacttactttcataaagatactttttaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actggtagtttctatctctgtattttactaaacttactttcataaagatactttttaaat 380

                                                                       
Query: 181 gtgtcttatatagaaggtcagtgcaattttaatttatatatgcatctgagaatatcttga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgtcttatatagaaggtcagtgcaattttaatttatatatgcatctgagaatatcttga 440

                                                                       
Query: 241 tgattaagcaatgtttggatgaaatttaaaataaacaaatgacttgttatcatttatttt 300
           |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaagaagcaatgtttggatgaaatttaaaataaacaaatgacttgttatcatttatttt 500

                                                                       
Query: 301 atttaataaatttagatgactttattttaataaaatcaatttgatctgtagtaaagatat 360
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attcaataaatttagatgactttattttaataaaatcaatttgatctgtagtaaagatat 560

                                                
Query: 361 tatatattctggttcattatcaacaataaataaaatg 397
           ||||||||||||||||||| |||||||||||||||||
Sbjct: 561 tatatattctggttcattagcaacaataaataaaatg 597


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 797
Length adjustment: 9
Effective length of query: 388
Effective length of database: 788
Effective search space:   305744
Effective search space used:   305744
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)