MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-402E12
Chromosome	12 (Build37)
Map Location	27,464,371 - 27,464,619
singlet/doublet	singlet
Overlap gene	none
Upstream gene	LOC668726, Rnf144, Rsad2, Tyki, LOC668731, 1700020D12Rik
Downstream gene	Sox11, LOC100043009
Link	Open Mouse BAC browser

no map image available.

Click to get alignment info.

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-402E12.T7 (MSMg01no402_e12.b1)	MSMg01-402E12.TJ (MSMg01no402_e12.g1)
ACC	AG501465	AG501466
length	782	1,224
length of high quality (start - end)	249 (66 - 314)	---
definition	CHROMAT_FILE: MSMg01no402_e12.b1 PHD_FILE: MSMg01no402_e12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:07 2005	CHROMAT_FILE: MSMg01no402_e12.g1 PHD_FILE: MSMg01no402_e12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:07 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT TCTCTACATTTCCTTATAAAGCAGAAAATGGGTGCTGTGTGTTGGAGGTG GGTAGAGAGATGATTTGGAGGAACTGGGGACAGTAGGGACAGTGGACAAC AGTCACCCTCCAAAACACCCAGGGGCTGTCTAGGGTGGAACACTAAAGTC AAGAAGGCACTGAGTCCCTCTAGAGTTACTGGAGGAACAGTTTGCTTCCT TCAGGGCAGACCATTAATAGTGTGAGAGATTTTTCACACACTTTCTTAGG CATTATGAGATAGGTATTTGTTTAGAGGACTTTTAATATTTAAGGGTTAT GTTTTATAGCCAATTGTTTATTTAACATGAAATGCCATGTGACTTTTCTA ACATAACAGCCTTCTTCTGTGTATTGTCATCTTTGTCAGATTCTTTTGAG AATTATGTTGGCTCTATTATTACAAATTATTTTTCTCTATTCAAATTGTA CTACCCCTCTGCGCTCTCTTTTTCACCTCTGTTATGTGCTCAGGACAACA ACCCCCCCTATTACAATCTTGTTTTTAAGGAATACTATTTCCTACTGATT TGTCCATTATAATGTCCTTAAGTGGACCTATAGAAACCCCCACCCACAAC TTATCTTTTTTTTTTTTCCCCCACACCTTCTTATTTTTACTCCCACGTTA GTATGTGGATTTCCCTCAATGCACCTCCTTCTTCGAACCATCTTACCTCT TTCCTCTTTTTTTCTCTATATCACACCCTCAN	TTATCAAATTTTCTNTTCCAGTAAATTAGGTCATGATATGGTTCTACGAC GGTACGCCAGAAGAAAGTATATAGAGGAATAATATAGAGTTCTTCTCCCC AGAAGNAAAAAAAAAAGGGACGGGGAGAGAACCCGTATGAGGAGTGTGTT TCCCTCGCAGAAGAAGATATACCTCGCGTAAAGACTTCTGAGACGTGCCT AATTTCTATCTATCTGTACTGTAATTTATACTCCTCTACTCGCGCGTAAA TTATGTGGCGAAGGATTAGCGGCTAGGGTTATAGTGCTCTCTGCGTGCTT TATGAAAGATATGAGAAGATGTCGTGCGCTGGGCGGACCACATCACCGAC GCGCTGGCTGCTTCATGTGTACCTCTACTATATTTTGTGTATTCTATTTC ACCCTCTTTCTGCTTCTCCTCCACATTTAATACACAGTACTAATATTATG TGTTGCTCTCGTGTGAGCGTTTCTTCACACAATATAGAGAGACGTTATGA TATATAGAATTTAGATATCTCATATTGCCTACATAACACTAGCTACGTAC ACATATATATGATTGTAGGACGCGTTCCTATCTATATTTTAACATATCAA TAATATCTCTGTTTTATTTTATTTTAGCGACGCGCAGNGTATAAACTAAC CGTAGAATATACTGCGCCACTGATGTGTGTATGTGTCTGTATATCCGCTG TGATTCTGGTATTTACTGTGTGAGTTCTGCACCTATTATGACACCACTCT CATGTATTAGGCGATTGGGACGTTACTCAATAGATCGCTTCACAGTATGT CTAATTGACATGACCTAACCGCACATTCGTCCATACCCTAATCCGTAGAG ACACGTACTGTTGCTATAGCTGATATCATACAGTAGTTTTCACGCTTTTG ATATGCAGCTTCAAGAACCTATCGCTGTCGCCCTGTAATACTAACTTTAT TTCTCTATGTATATCTGCATATCTATATTTATGAGTGATTAACAGACGTG TATTATACTCAGCTTGTATTATGTTGATTTGTATACACACATATGATACG CATCAGCCTAATATCTACCGGCTGCCGAGAGAGCGATATAGTTATCGTGA TGCGGAGCTGCATTGACANGATGATTATAATTACGACATACATCACACTC TAGATTGTATATCGATTCTAAGTTGATTACTACNAGACACTAGACACACG CATTTACCACTTCCACTTATCTCN
quality values	Open. Hide. 11 11 11 16 15 12 12 19 22 19 15 15 14 24 22 18 22 27 27 37 31 30 21 10 8 10 10 8 6 7 6 6 6 6 7 9 9 9 8 8 10 10 10 15 27 32 28 23 23 28 32 33 37 25 21 11 7 7 6 8 8 8 8 8 10 18 22 28 34 32 33 33 33 33 36 35 28 28 28 35 37 37 37 43 43 43 48 48 57 48 48 48 59 57 57 46 46 46 43 46 46 46 43 43 47 46 48 48 41 41 41 41 41 47 57 57 43 43 37 43 39 47 57 57 57 57 44 37 37 35 39 39 35 42 41 33 32 32 32 37 37 28 28 40 40 50 57 57 48 47 44 43 43 43 38 24 36 43 43 44 44 57 52 52 43 43 32 32 32 43 43 43 50 50 52 54 57 57 57 59 59 59 57 52 52 43 43 32 32 43 43 52 52 43 50 39 39 43 43 52 52 52 52 52 57 57 57 54 52 52 52 57 52 52 52 57 57 57 57 59 59 57 57 57 54 57 57 57 57 57 57 57 57 59 57 57 41 41 41 57 57 57 57 59 44 44 28 28 28 27 32 32 43 43 36 36 23 23 23 36 37 44 57 57 48 43 43 43 43 37 39 41 35 35 36 44 36 39 36 42 39 47 42 48 39 43 43 42 36 36 36 43 59 59 48 43 43 39 39 39 39 43 43 47 47 47 47 41 41 28 28 10 8 8 8 8 8 8 11 11 9 9 11 20 28 29 29 20 23 28 32 37 39 39 30 30 30 32 39 39 39 39 30 28 24 23 19 17 18 21 15 17 32 23 27 12 12 12 15 12 12 12 15 16 16 12 15 12 18 18 20 18 20 20 20 20 24 24 28 19 12 12 12 11 11 11 11 12 12 12 25 25 43 30 24 15 10 10 10 22 26 32 24 18 14 12 15 12 12 13 18 26 24 32 30 25 17 17 12 12 12 15 15 12 15 8 8 8 8 8 11 11 15 23 13 13 13 13 16 16 24 12 12 13 26 30 28 24 13 12 12 10 11 11 9 9 9 16 16 16 18 18 14 13 17 8 8 8 8 12 18 18 16 10 8 10 8 12 10 14 14 17 21 10 15 11 13 9 8 8 10 10 10 8 12 12 11 11 11 18 10 10 9 9 10 7 8 8 8 9 9 8 8 8 8 8 8 8 8 11 11 8 8 8 8 8 8 7 9 10 11 8 8 8 10 10 10 10 10 10 16 12 12 11 11 12 12 11 11 11 11 12 12 12 11 10 11 10 10 12 9 8 8 8 8 8 8 8 9 12 12 16 16 17 10 10 9 9 9 11 11 11 11 15 12 12 11 10 12 12 12 8 8 6 6 8 8 11 10 12 12 8 8 8 12 19 11 11 10 10 9 9 9 8 8 10 10 10 10 9 8 8 8 8 8 9 9 8 8 8 8 8 8 8 8 11 10 15 12 14 9 9 8 12 8 8 8 10 11 12 12 9 9 9 12 15 15 11 12 12 10 10 9 9 11 13 11 15 15 16 19 8 8 6 6 8 8 8 8 8 8 8 8 8 8 10 12 10 10 10 13 13 8 8 8 8 8 8 10 8 6 6 6 8 8 11 11 11 12 13 11 9 8 8 6 6 6 6 8 8 12 12 10 10 10 10 10 9 10 10 8 8 8 6 6 8 8 10 8 13 7 6 6 8 8 8 11 10 10 8 8 6 7 8 8 9 13 15 19 24 15 10 10 10 7 7 8 8 8 8 8 8 8 8 7 9 8 10 8 8 3 0	Open. Hide. 6 6 6 8 6 6 6 6 6 6 6 8 8 3 0 3 8 8 6 8 11 11 9 8 8 6 6 6 6 6 6 10 8 8 8 8 8 8 8 8 8 8 8 6 6 6 6 6 8 10 7 7 7 6 8 6 6 8 6 6 6 6 8 8 10 8 8 10 9 9 9 10 9 9 8 6 6 6 8 8 6 6 6 6 6 6 8 6 6 6 6 6 6 8 8 10 11 12 10 9 9 7 7 7 3 0 3 7 7 9 9 9 9 8 8 8 8 8 6 6 6 6 10 10 7 7 6 8 8 8 6 6 9 7 7 8 8 8 8 8 8 8 7 9 9 9 9 9 9 11 10 8 8 6 6 6 6 6 6 6 6 6 6 6 6 6 8 8 9 11 11 9 8 8 8 8 8 8 10 10 10 10 8 8 8 8 8 8 6 6 6 6 6 8 8 8 8 8 8 8 6 7 7 8 6 8 8 12 10 8 10 8 8 8 8 8 8 8 8 8 8 8 8 8 6 11 6 6 6 6 6 6 6 6 6 6 6 8 6 8 8 8 8 8 8 8 8 8 8 8 10 10 10 15 15 10 8 8 8 8 8 8 6 6 6 6 6 6 8 8 8 8 8 8 10 8 11 10 10 10 13 10 10 10 10 10 10 9 10 8 8 6 6 6 6 10 8 8 8 9 11 10 8 6 6 8 8 8 8 8 8 6 6 6 6 6 6 6 8 8 6 6 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 10 8 8 8 6 9 6 8 6 7 8 7 8 8 8 12 8 8 8 8 10 8 8 8 8 8 13 12 8 8 8 8 8 8 6 6 6 6 7 7 9 11 9 7 7 8 6 8 10 10 10 10 9 9 7 6 8 8 6 9 8 8 9 9 9 9 8 8 8 8 6 6 6 6 6 10 8 8 8 8 6 8 6 6 8 8 9 10 10 12 12 13 13 11 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 10 11 11 11 10 6 6 6 6 8 10 8 8 6 6 6 6 9 9 9 9 7 8 8 6 6 6 6 8 10 10 12 10 9 7 6 8 6 6 6 6 6 6 8 8 9 10 11 16 11 10 8 8 8 6 6 6 7 6 8 10 10 10 8 8 8 8 8 8 8 8 6 7 6 6 10 10 10 10 15 16 10 11 11 11 13 11 11 11 12 12 12 10 10 9 9 11 11 8 8 8 8 9 10 10 11 17 11 10 8 10 8 8 8 8 8 8 10 10 11 11 11 11 6 8 6 7 8 10 10 8 10 10 7 7 6 8 6 6 6 6 8 10 8 8 8 8 8 8 8 6 6 8 6 6 6 6 6 6 6 8 10 9 9 9 15 9 9 9 9 7 10 10 10 9 9 9 9 9 9 9 9 8 8 3 0 3 6 6 6 7 6 8 6 6 6 8 8 8 8 6 8 6 6 8 8 8 8 8 8 8 6 6 6 6 8 8 10 10 8 8 8 8 8 8 8 8 8 8 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 9 8 8 8 6 7 7 9 8 10 8 8 8 8 8 8 10 8 6 6 8 8 8 8 6 6 6 6 6 6 12 12 8 8 6 6 10 13 19 10 8 8 8 9 9 8 10 8 6 6 6 6 10 8 8 6 6 8 8 8 8 8 8 8 8 9 12 13 11 6 6 6 6 8 8 8 8 8 8 8 8 8 8 8 8 7 7 7 8 8 8 8 8 8 8 8 8 8 6 9 7 9 9 9 8 8 10 8 8 9 9 7 8 7 7 8 6 8 8 8 8 8 10 12 10 8 8 8 8 8 8 6 6 6 6 8 6 6 6 6 8 8 10 8 6 6 8 8 9 9 9 9 9 9 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 10 8 8 8 8 8 11 10 10 9 9 9 10 9 10 8 8 6 6 6 8 8 8 11 8 8 8 8 8 9 9 9 6 8 6 6 8 6 7 6 6 6 7 8 6 8 8 8 9 9 10 10 11 10 10 8 8 6 6 8 8 8 9 7 7 6 9 10 11 12 11 8 8 6 6 8 10 6 6 8 6 9 9 8 8 10 8 8 8 8 6 6 6 6 6 6 7 6 8 7 8 8 12 8 8 8 8 8 8 10 9 8 8 8 8 8 8 9 9 8 8 6 7 7 7 6 6 8 6 10 8 8 7 6 8 8 8 6 6 8 8 8 13 7 6 6 6 6 8 8 11 8 8 6 6 6 6 8 8 8 8 8 8 6 6 6 8 6 9 9 9 6 8 6 6 8 8 8 8 8 8 8 8 7 8 8 8 6 6 6 8 8 10 9 9 8 8 8 8 8 8 8 8 8 6 6 6 6 6 6 8 8 8 8 8 8 8 6 6 6 6 7 6 6 6 6 6 6 8 6 6 6 6 8 8 10 8 8 6 6 6 6 6 7 8 8 10 10 6 8 7 3 0 3 6 8 6 10 15 11 11 11 16 15 18 16 13 8 8 8 8 6 6 6 6 6 6 7 6 9 6 8 8 8 8 8 8 8 6 6 6 8 8 8 13 10 8 6 6 10 6 10 8 10 10 10 11 7 6 6 8 8 8 8 6 6 3 0 3 8 10 10 10 6 6 6 6 8 6 6 6 6 6 6 6 6 6 6 11 8 8 6 6 6 6 10 10 8 8 8 6 8 6 6 9 8 3 0

Alignment Information

BAC End 1	BAC End 2
Query= MSMg01no402_e12.b1 MSMg01no402_e12.b1 CHROMAT_FILE: MSMg01no402_e12.b1 PHD_FILE: MSMg01no402_e12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:07 2005 (249 letters) >mm_chr12_27464171_27464819 Length = 649 Score = 482 bits (249), Expect = e-140 Identities = 249/249 (100%) Strand = Plus / Plus Query: 1 ataaagcagaaaatgggtgctgtgtgttggaggtgggtagagagatgatttggaggaact 60 \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| Sbjct: 201 ataaagcagaaaatgggtgctgtgtgttggaggtgggtagagagatgatttggaggaact 260 Query: 61 ggggacagtagggacagtggacaacagtcaccctccaaaacacccaggggctgtctaggg 120 \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| Sbjct: 261 ggggacagtagggacagtggacaacagtcaccctccaaaacacccaggggctgtctaggg 320 Query: 121 tggaacactaaagtcaagaaggcactgagtccctctagagttactggaggaacagtttgc 180 \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| Sbjct: 321 tggaacactaaagtcaagaaggcactgagtccctctagagttactggaggaacagtttgc 380 Query: 181 ttccttcagggcagaccattaatagtgtgagagatttttcacacactttcttaggcatta 240 \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| Sbjct: 381 ttccttcagggcagaccattaatagtgtgagagatttttcacacactttcttaggcatta 440 Query: 241 tgagatagg 249 \|\|\|\|\|\|\|\|\| Sbjct: 441 tgagatagg 449 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.34 0.600 1.10 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 2, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 13 Number of extensions: 1 Number of successful extensions: 1 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 249 Length of database: 649 Length adjustment: 9 Effective length of query: 240 Effective length of database: 640 Effective search space: 153600 Effective search space used: 153600 X1: 7 (13.9 bits) X2: 517 (999.5 bits) X3: 517 (999.5 bits) S1: 7 (14.4 bits) S2: 7 (14.3 bits)

BAC End 1

BAC End 2

Query= MSMg01no402_e12.b1 MSMg01no402_e12.b1 CHROMAT_FILE:
MSMg01no402_e12.b1 PHD_FILE: MSMg01no402_e12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:07 2005
         (249 letters)



>mm_chr12_27464171_27464819
          Length = 649

 Score =  482 bits (249), Expect = e-140
 Identities = 249/249 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataaagcagaaaatgggtgctgtgtgttggaggtgggtagagagatgatttggaggaact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataaagcagaaaatgggtgctgtgtgttggaggtgggtagagagatgatttggaggaact 260

                                                                       
Query: 61  ggggacagtagggacagtggacaacagtcaccctccaaaacacccaggggctgtctaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggggacagtagggacagtggacaacagtcaccctccaaaacacccaggggctgtctaggg 320

                                                                       
Query: 121 tggaacactaaagtcaagaaggcactgagtccctctagagttactggaggaacagtttgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggaacactaaagtcaagaaggcactgagtccctctagagttactggaggaacagtttgc 380

                                                                       
Query: 181 ttccttcagggcagaccattaatagtgtgagagatttttcacacactttcttaggcatta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttccttcagggcagaccattaatagtgtgagagatttttcacacactttcttaggcatta 440

                    
Query: 241 tgagatagg 249
           |||||||||
Sbjct: 441 tgagatagg 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

no map image available.

BAC End Information

Alignment Information