BAC Information

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BAC

Clone NameMSMg01-403N20
Chromosome12 (Build37)
Map Location 58,517,604 - 58,517,974
singlet/doubletsinglet
Overlap genenone
Upstream geneE030019B13Rik, Titf1, LOC100039993, Nkx2-9, Pax9, Slc25a21, AU021838
Downstream geneLOC100040044, Foxa1, 4921506M07Rik, EG217600, BC042761, Sstr1, Clec14a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-403N20.T7 (MSMg01no403_n20.b1)MSMg01-403N20.TJ (MSMg01no403_n20.g1)
ACCAG502674AG502675
length800786
length of high quality
(start - end)
383 (62 - 444)392 (69 - 460)
definitionCHROMAT_FILE: MSMg01no403_n20.b1 PHD_FILE: MSMg01no403_n20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:18 2005CHROMAT_FILE: MSMg01no403_n20.g1 PHD_FILE: MSMg01no403_n20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTATGCCAGAGGATCCGCGGAATTCTG
TATTCTCTGGATAATACTTTTAATGTTAACATAATATTCAATGGTTATAA
TGGATAAATGTAAAGTACTTCACTAACTAACTATTTTTTGTTTTTGTTTT
TGTTTTTTTGTTTTTCGAGACGGGGTTTCTCTGTATAGTCCTGGCTGTCC
TGGAACTCACTTTGTAGACCACACTGTCCTAGAACTCAAAAATCCACCTG
CCTCTGCCTCCCAAGTGCTGGGATTAAAGGCCTAACTCTTTTTTTTTTTT
TAATATTTTTTTTATTACGTATTTTCCTCAATTACATTTCCAATGCCATC
CCAGAAGTCCCCCATACCCTCCCCCCCAGTCCCCTACCCACCCATTCCCA
CTTTTTGGCCCTGGCATTCCCCTGTACTGGGGCATATAAAGTTTGCGTGT
CCAATGTTTCTCTTTTTCTAGTGACGCCCGACTATAATGCCCACCTCCTT
TTTCAACTATAACTCTATTGACCAAACCCCTGTTGCTATCCCTGAATACT
ACCTTTTGAATCAACTTTCCCTTTGCATACATACTACCTTCTTCCCTTTT
TTTTCTTCCCCCGCCATCCCGCTTATCTTTCTCTTCCCCTTTTTTTCCCC
TATTCCCTACTCTACTTCTTTTTCCCCTCTCCTCTCCCCTTTTTTCCCCT
TTTTTTCTCCCTCCCCTCCTTTATTCCCCTCTTTTTTCCTCTTTTTCCTC
CCCTCTTCCTCCCTATTTTTCTCTTTTCCTCCCTTTTTTCTCTTTTTTCT

TTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTATTAGCATTTCACGAGTGTTCCTAGTACCT
TTTGTATTGTAGTAGGCACATGAATCTTCTCAGATGAACTTCCCAATGCA
TTTCCGGTAAATGATTGGACAGGTTTCTTTTTTGATACGTCTGACATAAA
CACCTCTTGCAGCATTTGTTCTTTTATTTTTATATTAACCTGTGTACATG
CATGCATGTACATGTGTGTTTGGAGGTGAAAGAACAACTTGTAAGAATTG
GTTCTCTTCCTCCACAGTATGGATTCCAGGGGCTGAATTCAGGTCATCAG
GCTTGGTAGTAAACACCTCTATTTACTAGACTCTAATTATTTCTTTTATA
TTAAGAACAGGGTACCACATAGGCTGATCTGGAATTTACTCCACAGTTCA
AGCTGGCCACTGTTAGTCTCTGGCCTTTACAACTGTTCTAATCTCTTTCA
ACCCTGCCTAAATTCACTGTCCGGACATCTTGCTGTTCCGCATGACTCTA
AATCCCCTCTCTTTCTTAATTTACTAAAACGCACTTCCCGTGGCTCCCTC
CTATTTGTAATGTTAACTCACGCCAAACACAACCCCCCCTTATACTACCA
TTGGCTTGTTCTAATTCTCTTCCCTTTTCTTTCCACTTTTCCCCCCGTTC
TTAAACCACGCTCCTCCATCCTCCACCACTTCCCATTCCCCCTCATTCTC
TTCCCTCATTAAACATTCTCTCCTCTATTTCGCAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no403_n20.g1 MSMg01no403_n20.g1 CHROMAT_FILE:
MSMg01no403_n20.g1 PHD_FILE: MSMg01no403_n20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:19 2005
         (392 letters)



>mm_chr12_58517604_58518395
          Length = 792

 Score =  663 bits (343), Expect = 0.0
 Identities = 364/371 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttattagcatttcacgagtgttcctagtaccttttgtattgtagtaggcacatgaatctt 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 371 ttattagcatttcacgagtgttcctagtaccttttgtattgtggtaggcacatgaatctt 312

                                                                       
Query: 61  ctcagatgaacttcccaatgcatttccggtaaatgattggacaggtttcttttttgatac 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 311 ctcagatgaacttcccaatgcatatccggtaaatgattggacaggtttcttttttgatac 252

                                                                       
Query: 121 gtctgacataaacacctcttgcagcatttgttcttttatttttatattaacctgtgtaca 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 251 gtctgacataaacacctcttgtagcatttgttcttttatttttatattaacatgtgtaca 192

                                                                       
Query: 181 tgcatgcatgtacatgtgtgtttggaggtgaaagaacaacttgtaagaattggttctctt 240
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 tgcatgcatgtacacgtgtgtttggaggtgaaagaacaacttgtaagaattggttctctt 132

                                                                       
Query: 241 cctccacagtatggattccaggggctgaattcaggtcatcaggcttggtagtaaacacct 300
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 131 cctccacagtatggattccaggggctgaattcaggtcataaggcttggtagtaaacacct 72

                                                                       
Query: 301 ctatttactagactctaattatttcttttatattaagaacagggtaccacataggctgat 360
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 71  ctatttactagactctaattatttcttttatattatgaacagggtaccacataggctgat 12

                      
Query: 361 ctggaatttac 371
           |||||||||||
Sbjct: 11  ctggaatttac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 792
Length adjustment: 9
Effective length of query: 383
Effective length of database: 783
Effective search space:   299889
Effective search space used:   299889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)