Query= MSMg01no404_e04.b1 MSMg01no404_e04.b1 CHROMAT_FILE:
MSMg01no404_e04.b1 PHD_FILE: MSMg01no404_e04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:52 2005
(532 letters)
>mm_chr12_119431202_119432133
Length = 932
Score = 946 bits (489), Expect = 0.0
Identities = 518/531 (97%), Gaps = 8/531 (1%)
Strand = Plus / Plus
Query: 6 ggaattcaaccacgg---tttccctttgtggaactcgttttccac-acatgaggaacatc 61
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 206 ggaattcaaccacgggga----cctttgtggaactcgttttccacaacatgaggaacatc 261
Query: 62 agcaaaaacagttgtgtgaaaacacttaaatatttgctgccatactaggggtatggctcc 121
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 262 agcaaacacagttgtgtgaaaacactgaaatatttgctgccatactaggggtatggctcc 321
Query: 122 atggaataaagctcttgctgtgcaagcatgaagacctcagcttggattccccaaagtcat 181
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 acggaataaagctcttgctgtgcaagcatgaagacctcagcttggattccccaaagtcat 381
Query: 182 gtacagttggatgtggcagagaagagggaagtgagataggaatccctccaaatgccatta 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gtacagttggatgtggcagagaagagggaagtgagataggaatccctccaaatgccatta 441
Query: 242 gtatcaccatctcctgcacagtcccctgaggtgtcaaacttctttatgtttatttacagt 301
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 442 gtatcaccatctcctgcacagtcccctgaggtgtcaaacttcagtatgtttatttacagt 501
Query: 302 ctctgtactcaaagatcttggtgggtagggaaggctctagaagctgtgctcttccgaata 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ctctgtactcaaagatcttggtgggtagggaaggctctagaagctgtgctcttccgaata 561
Query: 362 ctaactgccacaactagaagcccattctggtatatataaacacggagtacatttctgcat 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ctaactgccacaactagaagcccattctggtatatataaacacggagtacatttctgcat 621
Query: 422 ttaaagcaatagagtgttagaaagcccttgtcaggaaggtcacttgacttgtgtctgtaa 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ttaaagcaatagagtgttagaaagcccttgtcaggaaggtcacttgacttgtgtctgtaa 681
Query: 482 agggtcaaagtacaacaggtgccatgatctgtatattgatgccttctccca 532
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 agggtcaaagtacaacaggtgccatgatctgtatattgatgccttctccca 732
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space: 481284
Effective search space used: 481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no404_e04.g1 MSMg01no404_e04.g1 CHROMAT_FILE:
MSMg01no404_e04.g1 PHD_FILE: MSMg01no404_e04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:52 2005
(497 letters)
>mm_chr12_119605759_119606654
Length = 896
Score = 922 bits (477), Expect = 0.0
Identities = 492/497 (98%), Gaps = 1/497 (0%)
Strand = Plus / Minus
Query: 1 atctccattatgaagatggaggcaactttagagggactgactcaagtaggagtcagagtc 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 696 atctccattatgaagatggaggcaacgttagagggactgactcaagtaggagtcagagtc 637
Query: 61 tgagtaagagaaggtgccctgacatctcttggcattggaaatgtttcctgtcatatgcac 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 636 tgagtaagagaaggtgccctgacatctcttggcattgggaatgtttcctgtcatatgcac 577
Query: 121 ctctctggattagccaattcttgtgtacattagtcaagagaaagtgacggccaaagcaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 ctctctggattagccaattcttgtgtacattagtcaagagaaagtgacggccaaagcaga 517
Query: 181 atgaagaccaaagttgctagttacctctccaaaccctaacctgacactggaaataggaat 240
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 516 atgaagaccaaagttgctagttaccactccaaaccctaacctgacactggaaataggaat 457
Query: 241 acttgttttaatagagataaccatacacttcctagaccgtgtatttgccatgagtatcaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 acttgttttaatagagataaccatacacttcctagaccgtgtatttgccatgagtatcaa 397
Query: 301 gcaggcggatgcgtgcaacatctctgaaccttggcacaaattcaacgctacacaattgtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gcaggcggatgcgtgcaacatctctgaaccttggcacaaattcaacgctacacaattgtt 337
Query: 361 tggttgttattaccttgctggtctccagcaagtgttctttgactctactcattacatcag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tggttgttattaccttgctggtctccagcaagtgttctttgactctactcattacatcag 277
Query: 421 atgtgatgtaacaggagccgtcttatctgcactgtttactcaggcgccctgtgtttgtta 480
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 atgtgatgtaacaggagctgtcttatctgcactgtttactcaggcgccctgtgtttgtta 217
Query: 481 actgcaaaaaaagaaaa 497
|||||||||||| ||||
Sbjct: 216 actgcaaaaaaa-aaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 896
Length adjustment: 10
Effective length of query: 487
Effective length of database: 886
Effective search space: 431482
Effective search space used: 431482
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
