Query= MSMg01no404_e05.b1 MSMg01no404_e05.b1 CHROMAT_FILE:
MSMg01no404_e05.b1 PHD_FILE: MSMg01no404_e05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:52 2005
(282 letters)
>mm_chr12_75214756_75215447
Length = 692
Score = 342 bits (177), Expect = 1e-98
Identities = 268/317 (84%), Gaps = 45/317 (14%)
Strand = Plus / Minus
Query: 5 atctttc-cactgaggttgg-atgtctcctc-ctgttaatttaacccatctgtaagccca 61
||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct: 364 atctttcacactgaggttggtatgtctcctcactgttaatttaacccatctgtaagccca 305
Query: 62 tgagatgactactctca-gcc-caggtgg-atcctctttattccttact-cattcttttt 117
||||||||||||||||| ||| ||||||| |||||||||||| |||||| ||||||||||
Sbjct: 304 tgagatgactactctcaagccacaggtggcatcctctttatttcttacttcattcttttt 245
Query: 118 ttt--cacatgagttatctttttttaa-cagatatcttatatatatatat---------- 164
||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 244 tttttcacatgagttatctttttttaaacagatatcttatatatatatatatatatatat 185
Query: 165 --------tattacatattttcctcaag-acatttcca-tgctatcccaaaattccccca 214
||||||||||||||||||| ||||||||| ||||||||||||| |||||||
Sbjct: 184 atatattttattacatattttcctcaattacatttccaatgctatcccaaaagtccccca 125
Query: 215 tcccctccccccccacttc--ttttttatcca----ttcgcatttttttttttt---ggc 265
||||||||||||| ||||| | | ||| |||||||||||||||||| |||
Sbjct: 124 tcccctccccccc-acttccct-----acccacccattcgcatttttttttttttttggc 71
Query: 266 cctggtgttcccctgta 282
|||||||||||||||||
Sbjct: 70 cctggtgttcccctgta 54
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 692
Length adjustment: 9
Effective length of query: 273
Effective length of database: 683
Effective search space: 186459
Effective search space used: 186459
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no404_e05.g1 MSMg01no404_e05.g1 CHROMAT_FILE:
MSMg01no404_e05.g1 PHD_FILE: MSMg01no404_e05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:52 2005
(271 letters)
>mm_chr12_75017815_75018486
Length = 672
Score = 503 bits (260), Expect = e-147
Identities = 269/272 (98%), Gaps = 1/272 (0%)
Strand = Plus / Plus
Query: 1 tctggatatattcaaaatcatttgagccattttaaaaatgcttaatgaaacttaaaagtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctggatatattcaaaatcatttgagccattttaaaaatgcttaatgaaacttaaaagtt 260
Query: 61 ttggtggatgaaaaagatttgagaagtatacacatatgcagaaattatgagcacctatta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttggtggatgaaaaagatttgagaagtatacacatatgcagaaattatgagcacctatta 320
Query: 121 ttttactacctagagatccttgttcatgtatgtgtttaaaatatatgtgaatctattgtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttactacctagagatccttgttcatgtatgtgtttaaaatatatgtgaatctattgtt 380
Query: 181 ttcaacctactttaaaaaaa-tctgtattttgtccagtgttaaaagtggagacgacttta 239
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcaacctacttaaaaaaaaatctgtattttgtccagtgttaaaagtggagacgacttta 440
Query: 240 gaattgtgtatggttagcggagattaaacaag 271
||||||||||||||||| ||||||||||||||
Sbjct: 441 gaattgtgtatggttagtggagattaaacaag 472
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 672
Length adjustment: 9
Effective length of query: 262
Effective length of database: 663
Effective search space: 173706
Effective search space used: 173706
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
