Query= MSMg01no404_i16.b1 MSMg01no404_i16.b1 CHROMAT_FILE:
MSMg01no404_i16.b1 PHD_FILE: MSMg01no404_i16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:15 2005
(484 letters)
>mm_chr12_96143811_96144698
Length = 888
Score = 878 bits (454), Expect = 0.0
Identities = 478/488 (97%), Gaps = 4/488 (0%)
Strand = Plus / Minus
Query: 1 ggtcagcatcagaaaagtgatatgtttagatgcacaacataccaatatacacagggcaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 ggtcagcatcagaaaagtgatatgtttagatgcacaacataccaatatacacagggcaca 629
Query: 61 cagtttagcaatagtactcacttctcacgattagcaagcatttgctatgtgcgaagttcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 cagtttagcaatagtactcacttctcacgattagcaagcatttgctatgtgcgaagttcc 569
Query: 121 ctgttaactgtttactctatgatgctaccatttaccttttaaagcatatatggaaactta 180
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 ctgttaactgtttactctacgatgctaccatttaccttttaaagcatatatggaaactta 509
Query: 181 gcaattactagacaaatagtaatttaatattaacagccagatttgatggaatatatacat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 gcaattactagacaaatagtaatttaatattaacagccagatttgatggaatatatacat 449
Query: 241 caggttatcaaatgttaaagtatacatctatgctcttaatgattagactttcatgctggg 300
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 448 caggttatcaaatgtcaaagtatacatctatgctcttaatgattagactttcatgatggg 389
Query: 301 gtattattgtcaat----caaatgaagaatctcaatttataaaacaaacatgatctaaag 356
|||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 gtattactgtcaattaatcaaatgaagaatctcaatttataaaacaaacatgatctaaag 329
Query: 357 aatttcaaatcattgcactatgaaccaattatatgtatatggtgatacaggagctacaac 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 aatttcaaatcattgcactatgaaccaattatatgtatatggtgatacaggagctacaac 269
Query: 417 aacaaagaagaaacaattactcatatatagattaaagaaaaaggtattggagagactcta 476
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct: 268 aacaaagaagaaacaattactcgtatatagattaaagaaaaagatattggagagactcta 209
Query: 477 ctatgcag 484
||||||||
Sbjct: 208 ctatgcag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 888
Length adjustment: 10
Effective length of query: 474
Effective length of database: 878
Effective search space: 416172
Effective search space used: 416172
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no404_i16.g1 MSMg01no404_i16.g1 CHROMAT_FILE:
MSMg01no404_i16.g1 PHD_FILE: MSMg01no404_i16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:15 2005
(240 letters)
>mm_chr12_96002490_96003129
Length = 640
Score = 449 bits (232), Expect = e-131
Identities = 238/240 (99%)
Strand = Plus / Plus
Query: 1 aatgggtgtgtgcagggggctatgtgagtcactgggagtcactgggaggaactggagtgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatgggtgtgtgcagggggctatgtgagtcactgggagtcactgggaggaactggagtgt 260
Query: 61 gtgattgggatgtaaagtgaatatataaataagttgattgaaaaaaagtaactatggtgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgattgggatgtaaagtgaatatataaataagttgattgaaaaaaagtaactatggtgt 320
Query: 121 ggctcatataggtcttaggggtaaacctattgttaatttataaagtatatatggtaccaa 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 ggctcatataggtcttaggggtaaacctattgttaatttattaagtatatatggtaccaa 380
Query: 181 agtgtcttctagattcaggtctgagtatcctcatattagtgcagctttgggacctcatta 240
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 agtgtcttctagattcaggtctgagtatcctcagattagtgcagctttgggacctcatta 440
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space: 145761
Effective search space used: 145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
