Query= MSMg01no404_l03.b1 MSMg01no404_l03.b1 CHROMAT_FILE:
MSMg01no404_l03.b1 PHD_FILE: MSMg01no404_l03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:27 2005
(484 letters)
>mm_chr12_120288122_120289004
Length = 883
Score = 453 bits (234), Expect = e-131
Identities = 283/318 (88%), Gaps = 31/318 (9%)
Strand = Plus / Minus
Query: 7 gaattcttattctttatctcttcaaatatcatccaagccctcttccttttaaattataaa 66
|||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||
Sbjct: 316 gaattcttattcttaat-tcttcaaatatcatccaaaccctcttccttttaaattataaa 258
Query: 67 atttgttgacagtgtctaaggaaacaaactaaatgtatatataaaagtcaaaaccaggca 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 atttgttgacagtgtctaaggaaacaaactaaatgtatatataaaagtcaaaaccaggca 198
Query: 127 tggtggcacacgcctttaatcccggcacttgggaggcaaaggcaggcagatttctgagtt 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 tggtggcacacgcctttaatcccggcacttgggaggcaaaggcaggcagatttctgagtt 138
Query: 187 cagggccagcctggtctacag-----------------------------agagaaaccc 217
||||||||||||||||||||| ||||||||||
Sbjct: 137 cagggccagcctggtctacagagtgagttccaagacagccagggctacacagagaaaccc 78
Query: 218 tgtctagaaaaaaaaaacaaacaacaacaaaaaaagtcaagaaaatttacttcatttcaa 277
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 77 tgtctag-aaaaaaaaacaaacaacaacaaaaaaagtcaagaaaatttagttcatttcaa 19
Query: 278 gtacaaaattaatgtaat 295
||||| ||||||||||||
Sbjct: 18 gtacagaattaatgtaat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 883
Length adjustment: 10
Effective length of query: 474
Effective length of database: 873
Effective search space: 413802
Effective search space used: 413802
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no404_l03.g1 MSMg01no404_l03.g1 CHROMAT_FILE:
MSMg01no404_l03.g1 PHD_FILE: MSMg01no404_l03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:27 2005
(562 letters)
>mm_chr12_120175535_120176495
Length = 961
Score = 919 bits (475), Expect = 0.0
Identities = 533/557 (95%), Gaps = 11/557 (1%)
Strand = Plus / Plus
Query: 1 tctgtattttaaaagcaacttttagatgtggggagttttactgatacaatgacttagcaa 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgtattttaaaggcaacttttagatgtggggagttttactgatacaatgacttagcaa 260
Query: 61 agaacatcagaaacattatttgtctcatggacattgaaaattagtgagcctgacttgaat 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaacattagaaacattatttgtctcatggacattgaaaattagtgagcctgacttgaat 320
Query: 121 tgatttgttattatgcacaaaaggaaggattcaggggggttaggtcacaggactatagca 180
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgatttgttattatgcacaaa-ggaaggattcaggggggttaggtcacaggactatagca 379
Query: 181 ggaagaggaacctctcttatgagtagagaacggtcctgaagccattgctattcatatatg 240
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 380 ggaagaggaacttctcttatgagtagagaatggtcctgaagccattgctattcatatatg 439
Query: 241 ttggaatatggtctgtaaatattttatctttcaacactaggaggtgagacttaaaaaaga 300
||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct: 440 ttggaatatggtcagtaaatgttttatctttcaacactaggaggtgagacttaaaaaaaa 499
Query: 301 aa-aaaggagttcattactattttggacagtaggtgggatagtctgatttcttaaaaatt 359
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aagaaaggaggtcattactattttggacagtaggtgggatagtctgatttcttaaaaatt 559
Query: 360 ctgaaacaccaggtaccccttcctttattataatccatttgtcaatcctttggagtttta 419
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ctgaaacac-aggtaccccttcctttattataatccatttgtcaatcctttggagtttta 618
Query: 420 ttagtaaaacagttcagtgagagggaaaaacaacagtaccacatcaaagctgggtgtttt 479
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ttagtaaaacagttcagttagagggaaaaacaacagtaccacatcaaagctgggtgtttt 678
Query: 480 gtcttgcctactcatgtaacaaaccatttgtttccaaagtac--------agtctataca 531
||||| |||||||||||||||||||||||||||||||| ||| | ||||||||
Sbjct: 679 gtcttccctactcatgtaacaaaccatttgtttccaaaataccaaactacactctataca 738
Query: 532 actggagttgatttggt 548
||| |||||||||||||
Sbjct: 739 acttgagttgatttggt 755
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 961
Length adjustment: 10
Effective length of query: 552
Effective length of database: 951
Effective search space: 524952
Effective search space used: 524952
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
