Query= MSMg01no406_c22.b1 MSMg01no406_c22.b1 CHROMAT_FILE:
MSMg01no406_c22.b1 PHD_FILE: MSMg01no406_c22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:24 2005
(530 letters)
>mm_chr12_15591609_15592538
Length = 930
Score = 944 bits (488), Expect = 0.0
Identities = 518/528 (98%), Gaps = 4/528 (0%)
Strand = Plus / Plus
Query: 5 ggaattccttctct-tc-tcaactcctgcatttgtgcagggcaaacatctatatcatctg 62
||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattccttctcaatcgt-aactcctgcatttgtgcagggcaaacatctatatcatctg 263
Query: 63 gaattttacagttcacagatgcttagtttgcatcagtaccacataagatttggataagcc 122
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gaattttacagttcacagatgcttagtttgcatcagtaccacataagatttggataagc- 322
Query: 123 aatgacatccggcctaaagatgtccagagatccatgggatgcactcattgattggggtct 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aatgacatccggcctaaagatgtccagagatccatgggatgcactcattgattggggtct 382
Query: 183 tccaaatgttgccaatatagcccagatgacaccaagcatggagtgataatgaagaacacc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tccaaatgttgccaatatagcccagatgacaccaagcatggagtgataatgaagaacacc 442
Query: 243 ctcaaatgactcaaactgcctctgcttagttgattaaacagtactataaaggaagtgtgc 302
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 443 ctcaaatgactcaaactgcctctgcttagttgatttaacagtactataaaggaagtgtgc 502
Query: 303 agtgatccatatgtttgtaatctaggaatacattctgaagtgatcttttctttcaaaaat 362
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 503 agtgatccacatgtttgtaatttaggaatacattctgaagtgatcttttctttcaaaaat 562
Query: 363 tattttaaaaatattccttctagtcctttagaagaatgaaaactttgttgagaagagaac 422
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 563 tatttttaaaatattccttctagtcctttagaagaatgaaaactttgttgggaagagaac 622
Query: 423 aagaaagggaggagagtaggcaagggagacaggtacagagaaacagagacatacacacag 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 aagaaagggaggagagtaggcaagggagacaggtacagagaaacagagacatacacacag 682
Query: 483 gaagacacacagacagacagacacacagagacagactacttcctcatg 530
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gaagacacacagacagacagacacacagagacagactacttcctcatg 730
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space: 478400
Effective search space used: 478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no406_c22.g1 MSMg01no406_c22.g1 CHROMAT_FILE:
MSMg01no406_c22.g1 PHD_FILE: MSMg01no406_c22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:24 2005
(498 letters)
>mm_chr12_15776499_15777396
Length = 898
Score = 735 bits (380), Expect = 0.0
Identities = 435/466 (93%), Gaps = 24/466 (5%)
Strand = Plus / Minus
Query: 33 gagaagaccacacagtctgtacatactttctccttaaattgatggacatggattacctga 92
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898 gagaagaccacatagtctgtacatactttctccttaaattgatggacatggattacctga 839
Query: 93 taactaactacctgattacctgattacctgataactaactaccatggattctttttcttg 152
|||||||| | || || || ||||||||||||||| ||||
Sbjct: 838 ----taactacc-----a--tggtt---tg----------accatggattcttttccttg 803
Query: 153 aaatttatatgaaacttaatccccattatgagagattaagagagggtatcagttaggata 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 aaatttatatgaaacttaatccccattatgagagattaagagagggtatcagttaggata 743
Query: 213 tgcaaaaggccatgaggatactgttcgaatgaatggacttagtggattaatggttagtgg 272
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct: 742 tgcaaaaggccatgaggatgctgttcgaatgaatggacttagtggattgatggttagtgg 683
Query: 273 gtggtgatcttaagagtgtgtctgctctcaaaatcagtttgggtaagtctctagcacact 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 gtggtgatcttaagagtgtgtctgctctcaaaatcagtttgggtaagtctctagcacact 623
Query: 333 ccttgtctctcaccaggtgatgcctgagactacctcagaactgacaactgaaagactgtc 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ccttgtctctcaccaggtgatgcctgagactacctcagaactgacaactgaaagactgtc 563
Query: 393 tccagatatatcccttttaccttgaacaagaatggtgatcccaaataaataatttttcat 452
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 562 tccacatatatcccttttaccttgaacaagaatcgtgatcccaaataaataatttttcat 503
Query: 453 gaaaattttacccaatagcatttagagaaccaattaatgctcaact 498
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gaaaattttacccaatagcatttagagaaccaattaatgctcaact 457
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space: 433344
Effective search space used: 433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
