BAC Information

Click to search

BAC

Clone NameMSMg01-406I12
Chromosome12 (Build37)
Map Location 15,439,821 - 15,440,059
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043256, Map1lc3-ps7, LOC668492, LOC100042426
Downstream geneLOC217409, Trib2, LOC100043268, EG432636, LOC100043273
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-406I12.T7 (MSMg01no406_i12.b1)MSMg01-406I12.TJ (MSMg01no406_i12.g1)
ACCAG504705AG504706
length732766
length of high quality
(start - end)
---239 (74 - 312)
definitionCHROMAT_FILE: MSMg01no406_i12.b1 PHD_FILE: MSMg01no406_i12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:52 2005CHROMAT_FILE: MSMg01no406_i12.g1 PHD_FILE: MSMg01no406_i12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCATTCCNCCNCGGGGCCNNGNTTATCAAAAAATTGCGGCCGCTATAAG
AANCACTATTTCCCGCATCGCCGCGGNAANNCNNNAATTTCCCAACAGAG
AGAGGCAAAAACANNNNNANGGNNGAACAAANAANCCCGGAAAAGAGGCC
NCAGGCAACCCCCCCCNNNAAANNGGGNAAANNAANGGNNANAAANAACC
CAAAAACCNCCNGGGNNAAAGAGGGAANNCCCGGCCAAAAAAAAGGCCCC
CCCAAAAAACACCCAAAAACGGGGGGCCAAACCCGGGGGGGGAAACAAGG
GGCCCCCCCGGGGAAAACACACACAAGGGGAAGGGGCNNCGGGGAAAAAG
GGGGGGATTTTTTTTAAAAACAAATCTCCCACCCAAAAAAGGGGGGGGAA
GAAAAAAAAATGGGTTGGGGGGGGGGGGATTTTCCCAGAGAGCGGCCCAA
GAAAAGGGAAAACCCCGGCGCCGCCGAAAAAAAGGGGGGAGATTTTTTTT
TTTTTTTTTTTTTTTAAAAAAAAAACCCCCCCCCACAACNCCGCCCCTGC
CCAAGAACACGCGACAACAAAAAAGAACGAGAGCGTCACCCACCCCCCGG
ATACTCACTTAATGTGGGGAGTACGTTTCACTGACGCAACAACACAACCA
CAATTAACCGGGTCGGGGGGAAAAGAAAAACATCCTCTTCTTTTTTCTAT
TACTTAACAATATACACTTACTGTGATTTTTG
ATGAATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTAATAAGATCACAGACATTACTGAT
AACTGTGAGGTCTCTTCAGTTAGGGCAGAAAAAGAAATGAAGAGGCTTCA
CACAGGGCTATTTTCAGAACTTGTTGCCAAAAATCTAAAAGAAAAGTAAA
TATATAGGATTTAAAGAAAAGTAAATGTATAGGATTAGCCAGTTTGTTGT
TCTGTATATCTTGGATGGACAATTATAGAGCTGATCGTGAATCCTCGTGT
TCTGTGACTGGGGGTTGTTTATTAGAGAGTTCCATTATAGCAGATGAAGC
AAATGCACACCCCGTAAAGGTGTTCACAAGTATTCAAAAATGGGGTTTGA
TGAAAAACAACCAAGAACAACAGCAGAATACTTAAAATATAATTTTTGTG
TGTCTCAGTTTTTTCTAAACCTCCCACACCAGCGATGACTCAATAGTTGC
AGAGACCTTTATTCTGACTAACCACTATCTAGATATTTCCTTCAGGGTGT
AAAGGAACCATAAATGTGACACCAATGCTGGGCTCTCAATTAGAGGGCCC
TGATCAATATGAAAAGGCCCGACCAATTGTATTGGCCATGAATTCCCGTA
TCTTCTTCTTATGTCTTTCCTGTCCTTCCCTTCTTTCTCGCCCTCCGCCC
TTTCCCTTTTCTAGTTTCTCGCCCCCCCCCTATGCCTTTGCTCCTATTTC
CCTTCCTCCTACCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no406_i12.g1 MSMg01no406_i12.g1 CHROMAT_FILE:
MSMg01no406_i12.g1 PHD_FILE: MSMg01no406_i12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:52 2005
         (239 letters)



>mm_chr12_15439621_15440259
          Length = 639

 Score =  431 bits (223), Expect = e-125
 Identities = 235/239 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctaataagatcacagacattactgataactgtgaggtctcttcagttagggcagaaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctaataagatcacagacattactgataactgtgaggtctcttcagttagggcagaaaaa 260

                                                                       
Query: 61  gaaatgaagaggcttcacacagggctattttcagaacttgttgccaaaaatctaaaagaa 120
           |||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 261 gaaaggaagaggcttcacacagggctattttcagaactcgttgccaaaaagctaaaagaa 320

                                                                       
Query: 121 aagtaaatatataggatttaaagaaaagtaaatgtataggattagccagtttgttgttct 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 aagtaaatatataggatttaaagaaaagtaaatgtataggattggccagtttgttgttct 380

                                                                      
Query: 181 gtatatcttggatggacaattatagagctgatcgtgaatcctcgtgttctgtgactggg 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtatatcttggatggacaattatagagctgatcgtgaatcctcgtgttctgtgactggg 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)