BAC Information

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BAC

Clone NameMSMg01-406L08
Chromosome12 (Build37)
Map Location 21,437,255 - 21,437,636
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043371, LOC100042755, LOC100043377, LOC625810, 1700030C10Rik, 3110053B16Rik, LOC668698, LOC546752, EG629257, Ddef2, Itgb1bp1, Cpsf3, Iah1, Adam17, Ywhaq, LOC100043407
Downstream geneLOC100042796, 6030426L16Rik, LOC434693, EG668645, EG668646, LOC100043416, LOC668650, EG668496, LOC668653
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-406L08.T7 (MSMg01no406_l08.b1)MSMg01-406L08.TJ (MSMg01no406_l08.g1)
ACCAG504839AG504840
length761806
length of high quality
(start - end)
198 (323 - 520)381 (71 - 451)
definitionCHROMAT_FILE: MSMg01no406_l08.b1 PHD_FILE: MSMg01no406_l08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:07 2005CHROMAT_FILE: MSMg01no406_l08.g1 PHD_FILE: MSMg01no406_l08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TAAATTTGCGGCGCTAAACGAATACTATATTTCTGACTCGCGCGGAATCA
AGGCCCATTTTCTAAAAGAGAGGAAGAATCTACAGCAAACCAGTAGCCAA
CATCAAAGTAAATGGTGAGAAGCTTGAAGCAATCCCACTAAAATCAGGGA
CTAGACAAGGCTGCCCACTTTCTCTTCAACATAGTACTTGAAGTCCTAGC
CACAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATTGTATTAT
GATGAAGTCAAAATATCACTTTTTGCAGTTGATATGATAGTATATATAAG
TGACCCTAAAAATCCATCGATTACTCCTAAACCTGATAAACAGCTTCGGT
GAAGTAGCTGGATATAAAATTAACTCAAGCAAGTCAGTTGCCTTTCTCTA
CACAAAGAATAAACAGGCTGAGAAAGAAATCAGGGAAACAACACCCTTCT
CAATAGTCACAAATAATATAAAATACCTTGGCGTGACTCTAACTAAGGAA
GTGAAAGATCTGTATGATACAAATTTCTAGTCCCTGAAGAAAGAAATTAA
TGATGATCTCAGAAGATGGAAAGATCTCCCATGCTCATGGATTGGTTGGA
TCATCATTGCAAAAATGCCCATCTTGCCAAAAGCCATCTACAGATTCTTT
GTTTTTTTCTTTAAAATTCTAACTCAATTTCTTTCAACAAATTAGATAGA
ACAAGTAAGTCTGTATATTCCATCTTGGACTATCAGCAAAACCCCATGAT
TACTCTTACTN
TGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCTGCCGGAATCAGAGACACCCACAGAATTAAAATGTCTTTTTT
CTAATTCCTATTCCAATTTTGACCCCCTGGCTACTTCTTGTGGGAGAAAG
TGAGGAGATTATGATCTTAAAATTTTGATTTTTAAATAATTCTCTATCAG
CTCACAATTATTTCAAAATTGCAGGCCATTTGGTTGATGGCTTTCATCTT
CAATATATGAACACAAATATATATTTATATAATAACATATTATTTCTTAT
ATATAACATATCTACTTTTCTTTATATGTTAAAATATAAGTATATAATAT
ATTAAATAAAAATTATATATACATACATATCACCTATATGTATATATAAT
TAATGTATATGTGTATACATGTGTAATATACATTATATATGTATATATAA
TTAATGTATACGCATATATGCAATTATGCCTCCTTTTTTCCCTTTTTCCT
CCTTTTTCCCTACTCCCATTCTTTCGTTTTATATTCCTCTCCTCCTTCCC
CTTTTCCTTTCCTTCTATCTCCTCCTCCTCTTTTCCCCTCCCTTCTTCCT
ATATTCCCCCTCTATATTATGTCCCTTTCTCTCTTACCTTCCTTTCTATC
CCATTATTCTACTCCTAACTCTTGTTATTTCTTTTTTACCCCTTTCTCAT
TTCATGCATCTCACATATTTTTCCTTCTCCTTATACTCATATACCATCCC
TTTTACTTTTTACCACTATTCTTCTTTCTTATCCCCTTTCTTTTCCTCTT
TTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no406_l08.g1 MSMg01no406_l08.g1 CHROMAT_FILE:
MSMg01no406_l08.g1 PHD_FILE: MSMg01no406_l08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:07 2005
         (381 letters)



>mm_chr12_21437055_21437836
          Length = 782

 Score =  696 bits (360), Expect = 0.0
 Identities = 377/384 (98%), Gaps = 5/384 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   agacacccacagaattaaaatgtcttttttctaattcctattc-caattttgaccccctg 59
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 agacacccacagaattaaaatgtcttttttctaattcctattcacaattttgaccccctg 260

                                                                       
Query: 60  gctacttcttgtgggagaaagtgaggagattatgatcttaaaattttgatttttaaataa 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctacttcttgtgggagaaagtgaggagattatgatcttaaaattttgatttttaaataa 320

                                                                       
Query: 120 ttctctatcagctcacaattatttcaaaattgcaggccatttggttgatggctttcatct 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttctctatcagctcacaattatttcaaaattgcaggccatttggttgatggctttcatct 380

                                                                       
Query: 180 tcaatatatgaacacaaatatatatttatataataacatattatttcttatatataacat 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcaatatatgaacacaaatatatatttatataataacatattatttcttatatataacat 440

                                                                       
Query: 240 atctacttttctt--tatatgttaaaatataagtatataatatattaaataaaaattata 297
           ||||||| |   |  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atctactgta--taatatatgttaaaatataagtatataatatattaaataaaaattata 498

                                                                       
Query: 298 tatacatacatatcacctatatgtatatataattaatgtatatgtgtatacatgtgtaat 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tatacatacatatcacctatatgtatatataattaatgtatatgtgtatacatgtgtaat 558

                                   
Query: 358 atacattatatatgtatatataat 381
           ||||||||||||||||||||||||
Sbjct: 559 atacattatatatgtatatataat 582


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 782
Length adjustment: 9
Effective length of query: 372
Effective length of database: 773
Effective search space:   287556
Effective search space used:   287556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)