BAC Information

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BAC

Clone NameMSMg01-407A18
Chromosome12 (Build37)
Map Location 29,588,887 - 29,589,031
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC669327, 1110015M06Rik, Allc, Colec11, Rps7, Rnaseh1, Adi1, Ttc15, Tssc1
Downstream gene4833405L11Rik, LOC629608, Myt1l, LOC100043496
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-407A18.T7 (MSMg01no407_a18.b1)MSMg01-407A18.TJ (MSMg01no407_a18.g1)
ACCAG505098AG505099
length788755
length of high quality
(start - end)		150 (43 - 192)482 (75 - 556)
definitionCHROMAT_FILE: MSMg01no407_a18.b1 PHD_FILE: MSMg01no407_a18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:35 2005CHROMAT_FILE: MSMg01no407_a18.g1 PHD_FILE: MSMg01no407_a18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCCTCTCTGGAGGTGCCTTTCCCATTCACAGGTACACTGTCCTCTTGAA
GGTGATCCTAGATGGCTCAAGTGAGGCCCGGTGACCTGGGCCCTCTGAGG
ACTCAGTACAGAGTGGTTTCAAAGAGGAGCCACAAAAAGAGAAAAACCCA
CCAAGAGTTGCAGCAGAAGAGCTCTTAAGGAATGAGGNCGGGTCCTGTGT
GGCTTTATATCAAAGTAGGAAAGAACCCCNCCCCACCCCCACCCCCCCAA
ACACACACCTTTCTNNNTNCGCGGAATATGCTCCTCCCCAAAAANNCCAG
ACCCCTTTCCAGGNNGCNATGGCATCTCTTCGTGNNNGGNTTNTCTCTGT
TTAGGGGACAAAGAACGGGGAGGCGATTTTGCCCCATTTTAGAAGCAGGC
AACCTCTGCCATGAAGCCAGGGGGTATTTTACANNAAANACTTGTCCCCT
TGCTGAGGAAGTTTTCATTTTTCCTTCCCACCAAAAAATATTTTTTNNTT
TTCTTTTAAATTCCCAAAGGAACCCCAAGGAANNTTTGGGAAAACAGACG
GGGTGGTTCCAAGGGGTATTTTTTAATAANNNATGTGCCCCCTTGGGACC
CCTTATGGGCCCCACAATACTACACCTATACTATTTGTGAGGGGGGGGGG
GGGGGGCTNGGGGGGGCTAAAAAAATAAAANNNANNAAAAACCACTAAAT
ATTTTATTATTATTTATATATTTATAATTTATTGTTTG

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGTAAGAATGTTGTCTATTCAGTGAC
ATTCAGAATTGCCTCTGGTATTACACTATCACTTTGAATAAAAGCTAAGT
CACTGCCCTACACAGGAATTTACCATCATCTAGGAAGAAGGAAGTTTGAA
GCTGGGTGTGGTGGCGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGG
CAGGTGGATCTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCA
GGACAGCCAGGGTTATACAGAGAAACCCTGTCTCGAAAAACAAAACAAAA
AAAACAAAACAAAACAAAAGACTATGTCTTAAGAAGGAAGTTTGAGACCT
AAAGAGGAACCAGAATAGATACTTAGAACTATAGATAGCTAAGTTGCATC
CATACACACATATTTACAATGGCCTAGGGGAAAGGTGGACTATACAATAG
ACTAAAATAGGAACTATGGCAAGGGCACAAAGCCCTTGACCCTGGCTTCT
AAGATTAAGTGAATCTTAAGTGGAGCTCTTGTTGATCCCAGTTGTTGAAT
TCTATCCCACGTAGTTCCTGGTAGAACTTCTGGGTTTGACTCCTCTGGTT
TAAGAAGAAACCGTAACCTCTTTGTTCCTTGGGGGGGGGTACCCAACTTC
CCATTTTCTCTGGAATAAAAATAAAAGTTGATGCTCACTTGAACAATTCT
TTCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no407_a18.b1 MSMg01no407_a18.b1 CHROMAT_FILE:
MSMg01no407_a18.b1 PHD_FILE: MSMg01no407_a18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:35 2005
         (150 letters)



>mm_chr12_29588683_29589232
          Length = 550

 Score =  281 bits (145), Expect = 2e-80
 Identities = 145/145 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccctctctggaggtgcctttcccattcacaggtacactgtcctcttgaaggtgat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 gaattccctctctggaggtgcctttcccattcacaggtacactgtcctcttgaaggtgat 290

                                                                       
Query: 65  cctagatggctcaagtgaggcccggtgacctgggccctctgaggactcagtacagagtgg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 cctagatggctcaagtgaggcccggtgacctgggccctctgaggactcagtacagagtgg 230

                                    
Query: 125 tttcaaagaggagccacaaaaagag 149
           |||||||||||||||||||||||||
Sbjct: 229 tttcaaagaggagccacaaaaagag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 150
Length of database: 550
Length adjustment: 8
Effective length of query: 142
Effective length of database: 542
Effective search space:    76964
Effective search space used:    76964
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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