Query= MSMg01no407_f04.b1 MSMg01no407_f04.b1 CHROMAT_FILE:
MSMg01no407_f04.b1 PHD_FILE: MSMg01no407_f04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:56 2005
(551 letters)
>mm_chr12_78291743_78292693
Length = 951
Score = 953 bits (493), Expect = 0.0
Identities = 531/547 (97%), Gaps = 8/547 (1%)
Strand = Plus / Plus
Query: 6 aattctctccttcacgactatttctgagaaacggttactatggagaatgtgtgcacagac 65
||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 aattctctcctccatgactgtttctgagaaacggttactatggagaatgtgtgcacagac 265
Query: 66 tgtttctggccactgttcccagctgttgataactgccaaattactgagactttaagaaat 125
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tgtttctggccactgttcccagctgttgataactgccaaattactgagactttaagaaag 325
Query: 126 gttgtgctctctaccccaccccaacacacacacacacacacacacacacacacacacaca 185
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gttgtgctctctgccccaccccaacacacacacacacacacacacacacacacacacaca 385
Query: 186 cacacacacacacacacttacctcttggacaaattgaggaatctgggacgatgacttggg 245
||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 cacacacacac------ttacctcttggacaaattgaggaatctgggacgatgacttggg 439
Query: 246 ccagccttagagcagtggatgttggtacataccatggtgccctgccacccagagtagcat 305
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 440 ccagccttagagcagtggatgttggtacataccatggtgccctgccacccagagcagcat 499
Query: 306 ttatccttaagggagtagagaataaaaggaaaaagagaaaaagaaaaaaaaattttttca 365
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 500 ttatccttaagggagtagagaataaaaggaaaaagagaaaaagaaaaaaaa-ttttttca 558
Query: 366 aaggtgaagatgagctgcaggggcgctccccaaaatccgatggttctttggttggttgtg 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 aaggtgaagatgagctgcaggggcgctccccaaaatccgatggttctttggttggttgtg 618
Query: 426 ttgttgttgttgttgctgttgttttgttctgttttcccccagcgactccatcttcacata 485
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 619 ttgttgttgttgttgctgttgttttgttctgttttcccccagtgactccatcttcacata 678
Query: 486 atcccatccgggatctcttctttc-ccttttctctaaaacactccagtcctctgtggacc 544
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct: 679 atcccatccgggatctcttctttctccttttctctaaaacacttcagtcctctgtggacc 738
Query: 545 ccagagg 551
|||||||
Sbjct: 739 ccagagg 745
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 69
Number of extensions: 25
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space: 509081
Effective search space used: 509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no407_f04.g1 MSMg01no407_f04.g1 CHROMAT_FILE:
MSMg01no407_f04.g1 PHD_FILE: MSMg01no407_f04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:56 2005
(511 letters)
>mm_chr12_78513340_78514250
Length = 911
Score = 797 bits (412), Expect = 0.0
Identities = 421/424 (99%)
Strand = Plus / Minus
Query: 88 tcaagataaaaatatacattgaataaaatattaaattattttatttacttattttagata 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 911 tcaagataaaaatatacattgaataaaatattaaattattttatttacttattttagata 852
Query: 148 gagattttggccacgtagcctagactggccttgaacccataatcctcccatctcagactc 207
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 851 gagattttggccacatagcctagactggccttgaatccataatcctcccatctcagactc 792
Query: 208 ccaagcactggaattataggtatgtgccactgcagctaggtatacaatacctagctttat 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 ccaagcactggaattataggtatgtgccactgcagctaggtatacaatacctagctttat 732
Query: 268 attttattaaaaataaaatactattctacaattgaatcaaaaagaaaaaaagtgatgata 327
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 731 attttattaaaaataaaatactattctacatttgaatcaaaaagaaaaaaagtgatgata 672
Query: 328 gcctatacaactatacctataaatctgctagtctgaccttactagagatctgttatgttg 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 gcctatacaactatacctataaatctgctagtctgaccttactagagatctgttatgttg 612
Query: 388 cacaagctgcttacctgaccagtgtccagtggagaggccagatctgtctgtacatgtctc 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 cacaagctgcttacctgaccagtgtccagtggagaggccagatctgtctgtacatgtctc 552
Query: 448 acttacaggtctaaacacagtctcccatccaccagtagcatagcgccaattctgagattc 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 acttacaggtctaaacacagtctcccatccaccagtagcatagcgccaattctgagattc 492
Query: 508 caag 511
||||
Sbjct: 491 caag 488
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space: 451401
Effective search space used: 451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
