Query= MSMg01no407_h18.b1 MSMg01no407_h18.b1 CHROMAT_FILE:
MSMg01no407_h18.b1 PHD_FILE: MSMg01no407_h18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:08 2005
(572 letters)
>mm_chr12_98336378_98337351
Length = 974
Score = 1027 bits (531), Expect = 0.0
Identities = 560/570 (98%), Gaps = 2/570 (0%)
Strand = Plus / Plus
Query: 5 gaattccaacacagctttggaaaattaagtcaaataggtttagcatttttaaatatattt 64
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 205 gaattccaacacagctttggaaaattaagtcaaataggtttagcattttttaatatattt 264
Query: 65 ttattatgtattttcctcaattacatttccaatgctatcccaaaagtcccccacaccctc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttattatgtattttcctcaattacatttccaatgctatcccaaaagtcccccacaccctc 324
Query: 125 ccctcgcacccattcccagttttttggccctggcattcatatcaagataaattcttattt 184
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccctcccacccattcccagttttttggccctggcattcatatcaagataaattcttattt 384
Query: 185 aatcaaaatattgaagctaggtatagaggcccatgcttctaatcccagtacttgggctgc 244
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aatcaaaatatcaaagctaggtatagaggcccatgcttctaatcccagtacttgggctgc 444
Query: 245 tgtgttgggagatggatttccacaagttcaaggccattatagggtatagagtaagacatt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgtgttgggagatggatttccacaagttcaaggccattatagggtatagagtaagacatt 504
Query: 305 gtctcaaacaaagagcagcaaaaatatgcttactatggcatagtatctattgatataaga 364
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 505 gtctcaaacaaagagcagcaaaaatatgcttactatggcatagtatctattgatataaaa 564
Query: 365 ataaatatcatgtacctaaaatcaaaccaacagacaaaatatagaggaaggatttt-cta 423
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 565 ataaatatcatgtacctaaaatcaaaccaacagacaaaatatagaggaaggatttttcta 624
Query: 424 aaaacaaaacaaaacaaaagtattctaaggggaaaaataagtatgaattagagacatact 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aaaacaaaacaaaacaaaagtattctaaggggaaaaataagtatgaattagagacatact 684
Query: 484 tcaaatcagaatagaaacatgacagaatatcaatgacaaaggtattttgatgtaactaan 543
||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 685 tcaaatcagaatagaaacatgacaggatatcaatgacaaaggtattttgatgtcactaaa 744
Query: 544 -aaattttaagttaatcatgggtaagcatt 572
|||||||||||||||||||||||||||||
Sbjct: 745 gaaattttaagttaatcatgggtaagcatt 774
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 974
Length adjustment: 10
Effective length of query: 562
Effective length of database: 964
Effective search space: 541768
Effective search space used: 541768
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no407_h18.g1 MSMg01no407_h18.g1 CHROMAT_FILE:
MSMg01no407_h18.g1 PHD_FILE: MSMg01no407_h18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:08 2005
(492 letters)
>mm_chr12_98518080_98518971
Length = 892
Score = 853 bits (441), Expect = 0.0
Identities = 480/493 (97%), Gaps = 2/493 (0%)
Strand = Plus / Minus
Query: 1 agagaaaagtggagtgttttgagataattgagggaatagtcaacatagtatggattctaa 60
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 692 agagaaaagtggagtgttttgaaataattgagggaatagtcaacatagtatggattctat 633
Query: 61 ggaatgaggaagtactaacttgcatgaagtcaagaaggattcttggactgagatattcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 ggaatgaggaagtactaacttgcatgaagtcaagaaggattcttggactgagatattcag 573
Query: 121 ctgagctggaaatattaaaaatgtaaaaatgagatggagctacaggatccatcacatcac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 ctgagctggaaatattaaaaatgtaaaaatgagatggagctacaggatccatcacatcac 513
Query: 181 tacttttggtattgatctgttagagataataactgtgcat-attctctcacaggagtttg 239
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 512 tacttttggtattgatctgttagagataataactgtgcataattctctcacaggagtttg 453
Query: 240 tcctttggacattgccttcacattcattaacataccttaaaagattgcttgtaaaagcat 299
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 452 tcctttggacattgccttcacattcattaacataccttcaaagattgcttgtaaaagcat 393
Query: 300 cagcttctttatgtttacaggaaagctaaggattagtaaggatgtgggactgatcaaaac 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 cagcttctttatgtttacaggaaagctaaggattagtaaggatgtgggactgatcaaaac 333
Query: 360 aaactctgaaaagtgtacagagccaggttaggtataggttcttgataataaaacctgagt 419
|||||||||||||||||| |||||||| ||||| | |||| ||||||| |||||||||||
Sbjct: 332 aaactctgaaaagtgtacggagccaggctaggt-ttggttgttgataagaaaacctgagt 274
Query: 420 tttctgtatgacagatgctgactagagttgttcccaatgataacttctatgagaatccct 479
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tttctgtatgacagacactgactagagttgttcccaatgataacttctatgagaatccct 214
Query: 480 ttgaatatggaat 492
||||| |||||||
Sbjct: 213 ttgaacatggaat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space: 425124
Effective search space used: 425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
