BAC Information

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BAC

Clone NameMSMg01-408E07
Chromosome12 (Build37)
Map Location 116,013,458 - 116,013,815
singlet/doubletsinglet
Overlap geneIgh
Upstream geneIghv5-13, Ighv2-6-8, EG629785, Ighv2-7, LOC668405, Ighv5-15, Ighv5-16, Ighv5-17, Ighv5-18, Ighv2-8, Ighv2-9, Ighv5-19, Ighv7-1, Ighv7-2, Ighv14-1, Ighv4-1, Ighv3-1, Ighv11-1, Ighv14-2, Ighv4-2, Ighv3-2, Ighv11-2, Ighv14-3, EG629812, Ighv6-2, Ighv9-1, Ighv12-1, EG629818, Ighv12-2, Ighv9-3, Ighv7-3, Ighv15-1, Ighv14-4, EG668438, Ighv7-4, EG629833, EG633457, Ighv13-1, Ighv3-6, EG636260, Ighv3-7, Ighv5-21, Ighv3-8, Ighv8-1, Ighv1-1, Ighv13-2, EG435321, Ighv6-3, EG628398, EG639510, Ighv6-6, EG432701, EG629849, Ighv1-2, Ighv10-1, Ighv1-3, Ighv1-4, Ighv10-2, EG668469, EG380809, Ighv1-6, EG668474, Ighv10-4, Ighv1-8, Ighv15-2, Ighv1-9, Ighv1-10, Ighv1-11, EG629860, Ighv1-13, Ighv1-14, Ighv1-15, EG629866, Ighv1-17-1, Ighv1-17, Ighv1-18, EG668493, Ighv1-19, EG668497, Ighv1-21-1, Ighv1-21, Ighv1-22, Ighv1-23, Ighv1-24
Downstream geneIghv1-25, Ighv1-26, Ighv1-27, Ighv1-28, Ighv1-29, Ighv1-30, Ighv1-31, Ighv1-32, Ighv1-33, Ighv1-34, EG668515, Ighv1-36, Ighv1-37, Ighv1-38, Ighv1-39, Ighv1-40, Ighv1-41, EG629906, EG629908, Ighv1-44, Ighv1-45, Ighv1-46, Ighv1-47, Ighv8-3, EG629919, Ighv1-48, Ighv1-49, EG640506, Ighv1-50, Ighv1-51, Ighv1-52, Ighv1-53, EG629930, EG668534, EG211331, Ighv1-55, EG634662, Ighv1-56, EG629936, Ighv8-7, Ighv1-57, Ighv8-8, Ighv1-58, EG432708, Ighv1-60, Ighv1-61, Ighv1-62, EG668544, EG238448, EG668549, EG432709, EG668552, Ighv1-63, Ighv1-64, Ighv8-10, Ighv1-65, EG668554, EG636462, LOC217924, Ighv1-66, EG435328, Ighv1-68, LOC435329, EG668563, Ighv1-69, Ighv8-12, LOC619863, EG638634, EG619886, Ighv1-72, EG668575
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-408E07.T7 (MSMg01no408_e07.b1)MSMg01-408E07.TJ (MSMg01no408_e07.g1)
ACCAG506026AG506027
length745746
length of high quality
(start - end)		516 (47 - 562)373 (79 - 451)
definitionCHROMAT_FILE: MSMg01no408_e07.b1 PHD_FILE: MSMg01no408_e07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:12 2005CHROMAT_FILE: MSMg01no408_e07.g1 PHD_FILE: MSMg01no408_e07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:12 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NTTCATAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGAAAGGCTGAATGCATGGAGCATGAACCACATGAATGCATAAA
AGAACCCCATGTTGCAGAGGGACATGGACACAGGCTCTATACCTAGCCGA
GAAGTTTCTGTGATTGACACATTGTTCCAAAAGAAAATTTAGTTTTCTGA
ATAAAATTTAATTCAGCATACTAACCATACTTAAAGGTAGACACATGCCC
TGCCGTAGATGACCAATATCCAGTGACATAAATGGCATTATTGTAAATAT
TATGTTTCATATCACTTCTATTGTTTTGTTCTAATATATCAGGTGCCATA
ATGCGACAAGCTAATAACTAGCAGGCGATCATCATGAAATCGCCTGCTTC
AGACTATTATATAATTTGTGACAGGTGTTCCCTTATTAAACACAGCTGCA
AGGGATTCATTTTAGGAAAGATTCCTGCTATTAATATGTTTTCCTGTTAT
TATTAAACATATATAACAATCACTAAGTAGTAGTAGACCCCTTTAGAAGC
AGATCTCTGCAGATCCACGAAGATGTACTCTCTTGTAGTGATGCCCTATA
TACNAATAGATGACATAAGTCTTAATGATGATCCCATAAAAATTCCTAAA
ATATATCGGGGGGTATTAAACTCTTTTATAAGGGGGACTGGATAACTCCC
TTTCTGAAAGTCAAAACGGATGGCGAATTTTTCCGGCTTACAATT

GCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGCAAAGAGATGTGGGTATA
GGATTAATTACTCTGTATCCTCTGTGGTTTTCTTTCTTAACTTATGCAAA
CCTATTGTGATTGACATGTAACGATTCCATGCTCAAACACTGTGAAGATT
CTGTATTAAACACTTCAAAGATTTATATTCTCTTGGTTATTATTATTATT
ATTATTATTATTATTATTATTATTATTATTACATATAAACCTAGAATCCT
GAGTTCTATGAGTCATTGGGCCACCATGTAGGCCTCATACAGGAGATGGT
CTGAGGACCCTGGCACATATATGCAGAGGACTGCCTGGTTTGGTCACATG
GGAGAAGATGCACCTAAACCTTGACACACTTGGAAGTCCCACAGAGCCGG
GTAACCCTGTGAAGGGTGGCATTCTATTGAAGAAGGGTTGGTTCACAAAC
ATTACACGAATTGCTAAACTCTGCTCCCTTTACCTAATTAGTTTCTAACT
TCCTATTCTCCACCTTATTTCCACACACTTGTCACCTTTTTTCCGCTTCC
TCCTTTCCGGTATTTCTATTATTACTCTTTGTTATATTTTTTCCTCCATT
ATTTATTTCTCCCTTTTATACTCTTATCTCGATTCTTCTTCCTCTTTCTT
CCACTTTATTATTTTTTCTTCTCCCTCTTTTCTCTTCTTTTCCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no408_e07.g1 MSMg01no408_e07.g1 CHROMAT_FILE:
MSMg01no408_e07.g1 PHD_FILE: MSMg01no408_e07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:12 2005
         (373 letters)



>mm_chr12_116013458_116014230
          Length = 773

 Score =  675 bits (349), Expect = 0.0
 Identities = 357/361 (98%), Gaps = 3/361 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagcaaagagatgtgggtataggattaattactctgtatcctctgtggttttctttctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tcagcaaagagatgtgggtataggattaattactctgtatcctctgtggttttctttctt 299

                                                                       
Query: 61  aacttatgcaaacctattgtgattgacatgtaacgattccatgctcaaacactgtgaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 aacttatgcaaacctattgtgattgacatgtaacgattccatgctcaaacactgtgaaga 239

                                                                       
Query: 121 ttctgtattaaacacttcaaagatttatattctcttggttattattattattattattat 180
           ||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||
Sbjct: 238 ttctgtattaaacacttcaaagatttatattctcttgg---ttattattattattattat 182

                                                                       
Query: 181 tattattattattattattattacatataaacctagaatcctgagttctatgagtcattg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tattattattattattattattacatataaacctagaatcctgagttctatgagtcattg 122

                                                                       
Query: 241 ggccaccatgtaggcctcatacaggagatggtctgaggaccctggcacatatatgcagag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ggccaccatgtaggcctcatacaggagatggtctgaggaccctggcacatatatgcagag 62

                                                                       
Query: 301 gactgcctggtttggtcacatgggagaagatgcacctaaaccttgacacacttggaagtc 360
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 61  gactgcctggtttggtcacatgggagaagatgcacctaaatcttgacacacttggaagtc 2

            
Query: 361 c 361
           |
Sbjct: 1   c 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space:   278096
Effective search space used:   278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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