NNNATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTGACCTGTAGATCTATGGCTGGCTTTCTCTGGAAGTCTC
TATAATTACATGCACAAAGCTTTATGCTTCAATACTGTGTTTGGATGAGG
GTTTGCTTCAGCAGCCTTATTATTCAAAGAAAGGTGTTAGAAACCTCTGA
AACCTTTCCCTAAAGGCTTAAGGTCATCCTTGGATCTAAGTAACAGGTCA
AAATGTCTTAATGTTTTCCATGGGAGTGATGAATACGCAAACATATCTCC
CTGGGCTGCCCTGGTTCCAAGTCTGATTGTCTTGTGAGTCTGTTGACAGA
TGCACGTATTCCAAGTGGCATCCATCTCTCTAGTTTCCTTTGAAACTTTA
CCCAAGCCACCCTGAAGCCTATCATAATTTGTCCTTGCTGGGGATCTCCT
GTTAATCTAACTCATACCTAGTTACGAGTGATTATCCTGCAGTCTTTGTT
TCTGTGAAACCCAAGGGAAGATGGTAGAAGTGTTTTGGGTTTCTAGTGAT
GGTAGCTAGATGCATTTACCTAATCAAATTATGTCTGAAGCATTCAGCAT
CATAAAGTGAATGCCAATTACCACTGGAACAGGGCATGAGTGAAATCCTT
CAAAGGAAAATCACTTGGCAGTTGCTGAAACTTGGATTGTTGCTGGGTCT
TTGCCCAACGGGTGGAAAAAGGTTTGTGCTGTTTTGAAGCCCTAATGAAA
TTGGTTCCATGTGGTGGGTGGGGG

TTTTTTTTTTTTTTTNTTTNTNTTTTTTTTTCTTAACTTTTNTTCTTTTT
TTTTTTATAAATTTTTTCTTGTTTGGTCCGGGGTTTGTGCTGCTATAAAT
TTTTGGGGGCNCTTTNTAAGGTTCCTCNTNTTNTTTNNNNTGGAGNNTGT
TTTTTTTTTTTTTTCTATCNGTNTTNNNGGGGGTGGGGAAAAANNAAGGA
TAAGGACTAAGGGGGNNTAGGCCCCTGGGGGNCGGGNCGGANCCGGGGTC
CGCCTCGNAACAATTNTTTAAAGGGTGGAACAACNTAAATAAGAAAGGGG
ATCCCGGGCGGGGAAAATTTCCACCCCTAAAATTTTCCAAATCCTTTCCC
CGAAAGGAACGGCTCCGGTAAAGGGGGCTTCCCGGGAAGGGGGAAAAAGG
GTTGGGGAAAAAAGGGAAAAGGGCCTGGGGAAAGATCCACAAGGGGGCCG
GGGGAAAGGGGGAACCCCTTCCAAAACCCGGGAGGGGAAAAAGGGGGGGG
CCGGGAAAAAAAAAAATTTTGGGGCCCCCAAAAGAAAGGGGGGAACNCCC
AGGGGGGAAAGGGGGGAAAAAATTCCCCCAAAAAAAAAAAGGGGGGGGGG
GGAAAAAGGGGCCCTAAAAAAAAAAAAAAACCCCCCCGGGGGGGGGGGGG
AAAAAAAGGGGGGGGAGAAAAAAAAAGGGGGCCAAAAATTTTTTTAAAAA
AGGAGAAAAACACCCCGGGGGGGGGGGGCGGCTTTAAAAGAAGCCCCCCC
CCCGGGGGGGGGGGGGCAAAAAAATATTCCGCCGGGGGAGGGGCCGCCCT
TTAAAAAAGAAAAAAAAAAAAGCTCC

Query= MSMg01no409_c18.b1 MSMg01no409_c18.b1 CHROMAT_FILE:
MSMg01no409_c18.b1 PHD_FILE: MSMg01no409_c18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:26 2005
         (538 letters)



>mm_chr12_54730939_54731875
          Length = 937

 Score = 1009 bits (522), Expect = 0.0
 Identities = 531/534 (99%), Gaps = 1/534 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttgacctgtagatctatggctggctttctctggaagtctctataattacatgca 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttgacctg-agatctatggctggctttctctggaagtctctataattacatgca 263

                                                                       
Query: 65  caaagctttatgcttcaatactgtgtttggatgagggtttgcttcagcagccttattatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 caaagctttatgcttcaatactgtgtttggatgagggtttgcttcagcagccttattatt 323

                                                                       
Query: 125 caaagaaaggtgttagaaacctctgaaacctttccctaaaggcttaaggtcatccttgga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 caaagaaaggtgttagaaacctctgaaacctttccctaaaggcttaaggtcatccttgga 383

                                                                       
Query: 185 tctaagtaacaggtcaaaatgtcttaatgttttccatgggagtgatgaatacgcaaacat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tctaagtaacaggtcaaaatgtcttaatgttttccatgggagtgatgaatacgcaaacat 443

                                                                       
Query: 245 atctccctgggctgccctggttccaagtctgattgtcttgtgagtctgttgacagatgca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atctccctgggctgccctggttccaagtctgattgtcttgtgagtctgttgacagatgca 503

                                                                       
Query: 305 cgtattccaagtggcatccatctctctagtttcctttgaaactttacccaagccaccctg 364
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 504 cgtattccaagtggcatccatctctctagtttccttggaaactttacccaagccaccctg 563

                                                                       
Query: 365 aagcctatcataatttgtccttgctggggatctcctgttaatctaactcatacctagtta 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aagcctatcataatttgtccttgctggggatctcctgttaatctaactcatacctagtta 623

                                                                       
Query: 425 cgagtgattatcctgcagtctttgtttctgtgaaacccaagggaagatggtagaagtgtt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 624 cgagtgattatcctgcagtctttgtttctgtgaaacccaagggaagatggtagaaatgtt 683

                                                                 
Query: 485 ttgggtttctagtgatggtagctagatgcatttacctaatcaaattatgtctga 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ttgggtttctagtgatggtagctagatgcatttacctaatcaaattatgtctga 737


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 937
Length adjustment: 10
Effective length of query: 528
Effective length of database: 927
Effective search space:   489456
Effective search space used:   489456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)