BAC Information

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BAC

Clone NameMSMg01-409D23
Chromosome12 (Build37)
Map Location 59,676,908 - 59,854,276
singlet/doubletdoublet
Overlap genenone
Upstream gene4921506M07Rik, EG217600, BC042761, Sstr1, Clec14a
Downstream geneLOC100040183, Sec23a, Sip1, Trappc6b, Pnn, EG544872, Mia2, Mgea6, Fbxo33, LOC665628, LOC238199, LOC665639, LOC665644
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-409D23.T7 (MSMg01no409_d23.b1)MSMg01-409D23.TJ (MSMg01no409_d23.g1)
ACCAG506777AG506778
length776725
length of high quality
(start - end)		478 (55 - 532)189 (58 - 246)
definitionCHROMAT_FILE: MSMg01no409_d23.b1 PHD_FILE: MSMg01no409_d23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:32 2005CHROMAT_FILE: MSMg01no409_d23.g1 PHD_FILE: MSMg01no409_d23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,676,908 - 59,677,382)(59,854,090 - 59,854,276)
sequence
NNNNNNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCATTACAAGGCACAGCCCAAAGCTTGGGAATGGTGCA
TCACGAGAATGTTCAATGATCTGGAGATGACCTCAAAGTTGCTCTTGACA
AGATCTGGGAGCAAAATGGTGAAAGTCAAAAGTGGAGTCCTGGACATTCT
AGGACTTGGCTATGTACCAATAATAATAAACCAAACACAAGCCAACTTTA
TCTTGTCCGGAGTTTTACTTTTCCCTTTAATGTCAGCCTTGTACCACAAG
TGAATATGAGCTTGGAGTAAGAAAACCCTAGAAGCTTAGCAGCTCTCTTT
AGAGGAAAGGAAATGTCACCCTGGGCCTCGAAGGCTCTGATAAATACTTT
TTCAAACATAACGTCAGCACCTGCAGGCACATGAAGAAAAAAAGATATCA
CGTATGTGAAACAGGAGTGATAACAGCAAGCAAAATAGCCAAAGGCTTTG
TCAGACCCAGTGAAAATAGGATCCACATCTTCAAGAAGAAAAATAAGCAG
GCACCATTTCAGTAGCATACAGACAATATAAACAGTGACGGCAGATATCA
AAAAGAGTCCTGCNTAAACCCCCAGGACTGGAAAATTTAAAACAAAATTA
AGACTTCCTTGGCATTATTTTCAAAACATAATGGACGGCTGAAAAAACAG
GAATAAACTGAAAAAACTCCCAAAAAAATTGGAGTGCCGATAAACAGCCC
CCAAAAGGGAAACCTATAATTTCAAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTATGTTCACTGTTCTTGGTGCTTCATCCCCTCTCCCACTTTC
TTTTATCCTCTATACTCCTCACCAAATGTCATCTTCTAACAAATTCCCCC
ACTTTCTGGTCATTTGTTGTTGTTTTGTCCTGCTGCATTTAACTTTGGTA
GCTTACATGAATATGGGGTGGGTTGTTTATTGGATTATGGGGAGNNNNNN
NNNNNNNNNNNNNTNNNNNNNNNNNNNNNNNNNTNNNNNNNNNNNGNNNN
NNNNTGTTTTTTTTTNTTNTTNTTTTTTNTTNTNNTTNNNTTTTTTTTTT
TTTTTTNNTNNTTGGTGGGTTTTGGTTGTGTTGTTTTTTGGGTTTTTTGT
GTTGTTTTTTGNTTTTTGTTTTTTGTTTTGGGTGTTTGTTGTTTTTTTTT
TGGTTNGTTTGTTGTTTTTTTTTTTTTTTTTTGTGTTTGTGGTTTGTTGT
TGTGTTGTTTGTTGTTTGTTTTTTTTTTGTTTTTTTGTTTTTTGTGGTTG
TTTTTTTGTTTTTTGTTTGTTGTTTTTTTTTGGTTTGGTTTTGGTTTTGG
TGGTGTTGTTTTTTTTTTTGTTTTTTTGGGTGTTTTGTGGGTGGTTTGTT
TTGTGTTTTTTTGTGTTGTTTTTTTTTTTGTTTTGTTTGTTTTTNTGTTT
TTTTTTTTTTTTGTTTTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no409_d23.b1 MSMg01no409_d23.b1 CHROMAT_FILE:
MSMg01no409_d23.b1 PHD_FILE: MSMg01no409_d23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:32 2005
         (478 letters)



>mm_chr12_59676705_59677582
          Length = 878

 Score =  903 bits (467), Expect = 0.0
 Identities = 473/475 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcattacaaggcacagcccaaagcttgggaatggtgcatcacgagaatgttcaat 63
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcattacaaggcagagcccaaagcttgggaatggtgcatcacgagaatgttcaat 263

                                                                       
Query: 64  gatctggagatgacctcaaagttgctcttgacaagatctgggagcaaaatggtgaaagtc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gatctggagatgacctcaaagttgctcttgacaagatctgggagcaaaatggtgaaagtc 323

                                                                       
Query: 124 aaaagtggagtcctggacattctaggacttggctatgtaccaataataataaaccaaaca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aaaagtggagtcctggacattctaggacttggctatgtaccaataataataaaccaaaca 383

                                                                       
Query: 184 caagccaactttatcttgtccggagttttacttttccctttaatgtcagccttgtaccac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 caagccaactttatcttgtccggagttttacttttccctttaatgtcagccttgtaccac 443

                                                                       
Query: 244 aagtgaatatgagcttggagtaagaaaaccctagaagcttagcagctctctttagaggaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aagtgaatatgagcttggagtaagaaaaccctagaagcttagcagctctctttagaggaa 503

                                                                       
Query: 304 aggaaatgtcaccctgggcctcgaaggctctgataaatactttttcaaacataacgtcag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aggaaatgtcaccctgggcctcgaaggctctgataaatactttttcaaacataacgtcag 563

                                                                       
Query: 364 cacctgcaggcacatgaagaaaaaaagatatcacgtatgtgaaacaggagtgataacagc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cacctgcaggcacatgaagaaaaaaagatatcacgtatgtgaaacaggagtgataacagc 623

                                                                  
Query: 424 aagcaaaatagccaaaggctttgtcagacccagtgaaaataggatccacatcttc 478
           ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 624 aagcaaaatagccaaaggctttgtcagacccagtgaaaataggctccacatcttc 678


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space:   406224
Effective search space used:   406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no409_d23.g1 MSMg01no409_d23.g1 CHROMAT_FILE:
MSMg01no409_d23.g1 PHD_FILE: MSMg01no409_d23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:32 2005
         (189 letters)



>mm_chr12_59853890_59854478
          Length = 589

 Score =  346 bits (179), Expect = e-100
 Identities = 185/187 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttatgttcactgttcttggtgcttcatcccctctcccactttcttttatcctctatactc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ttatgttcactgttcttggtgcttcatcccctctcccactttcttttatcctctatactc 328

                                                                       
Query: 61  ctcaccaaatgtcatcttctaacaaattcccccactttctggtcatttgttgttgttttg 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 327 ctcaccaaatgtcatcttctaacaaatccccccactttctggtcatttgttgttgttttg 268

                                                                       
Query: 121 tcctgctgcatttaactttggtagcttacatgaatatggggtgggttgtttattggatta 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 267 tcctgctgcatttaactttggtggcttacatgaatatggggtgggttgtttattggatta 208

                  
Query: 181 tggggag 187
           |||||||
Sbjct: 207 tggggag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 589
Length adjustment: 8
Effective length of query: 181
Effective length of database: 581
Effective search space:   105161
Effective search space used:   105161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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