BAC Information

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BAC

Clone NameMSMg01-410I04
Chromosome12 (Build37)
Map Location 99,550,301 - 99,550,881
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC382626, LOC100039743, LOC667732, LOC628351, LOC100039770, LOC667746, Galc, Gpr65
Downstream geneKcnk10, Spata7, Ptpn21, Zc3h14, Eml5, LOC100039845, Ttc8, EG667779, Ches1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-410I04.T7 (MSMg01no410_i04.b1)MSMg01-410I04.TJ (MSMg01no410_i04.g1)
ACCAG507742AG507743
length729726
length of high quality
(start - end)
490 (55 - 544)579 (83 - 661)
definitionCHROMAT_FILE: MSMg01no410_i04.b1 PHD_FILE: MSMg01no410_i04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:16 2005CHROMAT_FILE: MSMg01no410_i04.g1 PHD_FILE: MSMg01no410_i04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGGAGGGAGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTTTGTTCTTCTCTGAGCCCCATTTTTTAATGGGGTT
GTTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATA
TTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTT
GGTGGTCTCTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTG
GAGTTTCATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCA
TTGCTGTTCTGTTCAGGAATTTTTCCCCTGTGTTCATATCTTCAAGGCTT
TTCCCCACTTTCTCCTCTATAAGTTTCAGCGTCTCTGGTTTTATGTGAAG
TTCTTTGATCCATTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGAT
CGATTTGCATTCTTCTACATGATAACAACCAGTTGTGCCAGCACCATTTG
TTGAAAATGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAA
GATCTAGTGACCATAGGTGTGTGGGCTCATTCTCTGGTTCCTTAATTCTA
TTTCATTGGCCTACTTGTCTGTCTCTATACCATTACCATGTAGCTTCTAC
CACTATTGCTCTGTTTTACAGCTTTACATCCGGTTGCCCTTTCTCCCCTA
GGCTCCTTTCTCCTTTTTCCACCTTCTTG
AAANCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGAAAGATGGAATCCTT
ACTCTCAGACCTCATTTACACTGAACAGAGGCAGAAATACACATCCCCAA
AGGCTAACCCTAATACCTTTCTGATAACCACGAAACATCATGTCCTTAGC
GTTGTCTGGAGACTCTGACAAGAACTTTGCAGACCATAGTCATCTTCTTG
ATCCTCAGAGGACATGATTGCCAGCCCAGGTCAACACAGGGTACGTAAAA
TGCTGAGCACAGGACTATAGTGACCTAGTTCGTAATAAAGAATTCTCATA
GACAGGGCAGAGTTGTAACATCAGCAAAGCTGCTCATAGATCTGTGGCAT
TGCCTGCCATGGTTACCCTTCATATCCCTTTTTCTCCACACTGTGGGGTG
TATCATGAGTATTCGTAGTTTATGGCTAATAATAATAAGTAACAATTAAT
ATAATAATAATAATAATAATAATAATAATAATAATAATATAATCAGTGAG
TACATACATGTTTGTCCTTTTGGGACTGGGTTACCTCACTCGGGATGATA
TTTTCTAGTTCCATCCATTTGCCTGAAAATTTATGATGGCCTTGTTTTTA
ATAACTGCATAGTGTTGTGCAAATGAACCACATTTTCTGGAGGGCACTGG
GTGGCATAGGGAAGTTTTACCTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no410_i04.g1 MSMg01no410_i04.g1 CHROMAT_FILE:
MSMg01no410_i04.g1 PHD_FILE: MSMg01no410_i04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:16 2005
         (579 letters)



>mm_chr12_99550101_99551080
          Length = 980

 Score =  862 bits (446), Expect = 0.0
 Identities = 544/608 (89%), Gaps = 56/608 (9%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagaaagatggaatccttactctcagacctcatttacactgaacagaggcagaaatacac 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 cagaaagatggaatccttactctcagacctcgtttacactgaacagaggcagaaatacac 260

                                                                       
Query: 61  atccccaaaggctaaccctaatacctttctgataaccacgaaacatcatgtccttagcgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atccccaaaggctaaccctaatacctttctgataaccacgaaacatcatgtccttagcgt 320

                                                                       
Query: 121 tgtctggagactctgacaagaactttgcagaccatagtcatcttcttgatcctcagagga 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtctggagactctgacaggaactttgcagaccatagtcatcttcttgatcctcagagga 380

                                                                       
Query: 181 catg-attgccagcccaggtcaacacagggtacgtaaaatgctgagcacaggactatagt 239
           |||| || |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catggat-gccagcccagatcaacacagggtacgtaaaatgctgagcacaggactatagt 439

                                                                       
Query: 240 gacctagttcgtaataaagaattctcatagacagggcagagttgtaacatcagcaaagct 299
           |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gacctagttcgtgataaaggattctcatagacagggcagagttgtaacatcagcaaagct 499

                                                                       
Query: 300 gctcatagatctgtggcattgcc-tgccatggttacccttcatatccctttttctccaca 358
           ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct: 500 gctcatagatctgtggcattgccctgccattgttacccttcatatccctttttctccaca 559

                                                                       
Query: 359 ct--------------------------gtggggtgtatcatgagtattc-gtagtttat 391
           ||                          |||||||||||||||||||||| |||||||||
Sbjct: 560 cttaaaaaattatattctctttgggtctgtggggtgtatcatgagtattctgtagtttat 619

                                                                       
Query: 392 ggctaataataataagtaacaattaatataataataataataataataataataataata 451
           |||||||||||||||            ||||||||  |||||| |||||||| |||||| 
Sbjct: 620 ggctaataataataa------------ataataat--taataa-aataataacaataat- 663

                                                                       
Query: 452 ataatataatcagtgagtacatacatgtttgtccttttgggactgggttacctcactcgg 511
                     ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 664 ----------cagtgagtacatacatgcttgtccttttgggactgggttacctcactcgg 713

                                                                       
Query: 512 gatgatattttctagttccatccatttgcctgaaaatttatgatggccttgtttttaata 571
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 gatgatattttctagttccatccatttgcctgaaaatttatgatggccttgtttttaata 773

                   
Query: 572 actgcata 579
           ||||||||
Sbjct: 774 actgcata 781


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 980
Length adjustment: 10
Effective length of query: 569
Effective length of database: 970
Effective search space:   551930
Effective search space used:   551930
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)