BAC Information

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BAC

Clone NameMSMg01-410M02
Chromosome12 (Build37)
Map Location 114,246,094 - 114,429,616
singlet/doubletdoublet
Overlap genePacs2, Tex22, Mta1, Crip2, Crip1, 4930427A07Rik, LOC676349, Tmem121
Upstream geneTdrd9, A530050D06Rik, Kif26a, A730018C14Rik, A530016L24Rik, Tmem179, 2610204M08Rik, Adssl1, Siva1, Akt1, EG382639, AW555464, LOC382640, Pld4, AI450948, LOC100041194, BC022687, Cdca4, Gpr132, Jag2, Nudt14, Brf1, Btbd6
Downstream geneIgh, Igh-2, Gm900, Igh-1b, Igh-3, Ighg1, AI324046, LOC668370, LOC668375, EG382645, Igh-5, Igh-6, Ighj4, Ighj3, Ighj2, Ighj1, Ighd4-1, Ighd3-2, Ighd5-6, Ighd2-8, Ighd5-5, Ighd2-7, Ighd5-8, Ighd5-4, Ighd2-6, Ighd5-7, Ighd5-3, Ighd2-5, Ighd5-2, Ighd2-4, Ighd6-2, Ighd2-3, Ighd6-1, Ighd1-1, 4930523C11Rik, Ighd3-1, Ighd5-1, Adam6, Ighv5-1, Ighv2-1, Ighv5-2, Ighv2-2, Ighv5-3, Ighv5-4, Ighv6-1, Ighv2-3, Ighv5-5, Ighv5-6, Ankrd12-like, Ighv5-7, EG668389, Ighv5-8, Ighv5-9, Ighv5-10, Ighv2-5, Ighv5-11, Ighv5-12, Ighv2-6, Ighv5-9-1, EG628098, Ighv2-9-1, Ighv5-13, Ighv2-6-8, EG629785, Ighv2-7, LOC668405, Ighv5-15, Ighv5-16, Ighv5-17, Ighv5-18, Ighv2-8, Ighv2-9, Ighv5-19, Ighv7-1, Ighv7-2, Ighv14-1, Ighv4-1, Ighv3-1, Ighv11-1, Ighv14-2, Ighv4-2, Ighv3-2, Ighv11-2, Ighv14-3, EG629812, Ighv6-2, Ighv9-1, Ighv12-1, EG629818, Ighv12-2, Ighv9-3, Ighv7-3, Ighv15-1, Ighv14-4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-410M02.T7 (MSMg01no410_m02.b1)MSMg01-410M02.TJ (MSMg01no410_m02.g1)
ACCAG507930AG507931
length730712
length of high quality
(start - end)		229 (90 - 318)522 (91 - 612)
definitionCHROMAT_FILE: MSMg01no410_m02.b1 PHD_FILE: MSMg01no410_m02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:35 2005CHROMAT_FILE: MSMg01no410_m02.g1 PHD_FILE: MSMg01no410_m02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,429,388 - 114,429,616)(114,246,094 - 114,246,615)
sequence
GGGGGCAAGTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGATCGNGACC
CGCGNGNNATTCTCCATATTACTTAGAGCGAGGGAGNGNCCCCATCCCAT
CCCCCATCCCCGAGTCTGCTCACCATTCGCCTCCCTGCCCATTGGCAGTC
ATCTGACTTACCCAACACTTCACCTGAGGTATTCACTGAGGTCCCTGTGA
CCACAACTATCCCCCAGCCTCACACAGTAACCTTTCTTGATGTTAGCCAG
AATCCATCACTCACGGCCCTGGGATGCTTGCTGTTGGAGGGCCCAAATCC
AATTTCTTTCCATGTCCCCTTTGTTTTTTTCTGCCCAGNGCTGGNTCCAG
ATGCTCATCAGACTCAGACCTCCTAAGGACTTTAGATCACAGTCAGCAGC
CTAGCACCAGGATTTATGAAGCACGAGTGAATTATGGCGACAAGGGACCC
CTAGCTCCCTTCTCTACTATATCTGGACAAACATGCTACCTCAAGAAGTT
AGCTAAGACATGGCTAGCTGCACCCAGACTACGATGACCCTTTCCAAATG
GTACCACATATACCACATACCACCTACCTACTATGGTCCTGGCCTAAACT
AGACAAGGCTCCATCCCCACCTCCTATTCACTGCCACACTATACCTCTAC
CCCTTGGTTTTTTTTTCTACTGTGTTTTCCCATCTCTACCACTTGTTCCC
AATTTCTGTCCTTCTTCCCTCCCTACTTTG

GTGTGCGATNNNNTCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAACCTGGTCT
ACAGAGTGAGTTCTTGGATAGACAGGGTTACACAGAGAGACCCTGTCTCA
GAAAACAAAACAAAAAACAACAAAAACAAACAAACACAAGAGAGACAAAG
AGACACAGAGAGACAGAGACGGAGAACTTAATGTGTATGGGTATTGTGCC
TGCTTGTATGTTTACACACCACGTTTATGTCTGGTACCAAAAGAGTCCAG
AAGAGGCTGTCTGATTCCCTTAGCTGTAGTTGCAGATGGTTGAAAGATGT
TTTGTGGGTTCTGGGAATCGAACCCAGGTCTTCTTCAAGAGCAAACAGCG
CTCTTAACCATGCAGCAACTTCTCAACCCCTATGGCATTTTCTTACAGCA
GCCTGACTTACAACACACTATGTATGCAAAGCATTTGAGTCATTGTTTGA
GGGTTAGGGGCAGAGACTCCTCCTGACTATCTTATGACTCTGAATGCTGT
TAACTTTGACTAGTTTCATCATTTTTCCAGGTGTTCCCCTTGCATTTCAT
TGGCTTATTAAATTCTGTCCACNATGGCGACATTGTCTCCTCCTGCTTTA
AAGACCTGAATGACCTGCGTTACGGCATTACACACATGATGCTACCCTAA
TTGTCCACTGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no410_m02.b1 MSMg01no410_m02.b1 CHROMAT_FILE:
MSMg01no410_m02.b1 PHD_FILE: MSMg01no410_m02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:35 2005
         (229 letters)



>mm_chr12_114429188_114429816
          Length = 629

 Score =  427 bits (221), Expect = e-124
 Identities = 227/229 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccccatcccatcccccatccccgagtctgctcaccattcgcctccctgcccattggcagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ccccatcccatcccccatccccgagtctgctcaccattcgcctccctgcccattggcagt 370

                                                                       
Query: 61  catctgacttacccaacacttcacctgaggtattcactgaggtccctgtgaccacaacta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 catctgacttacccaacacttcacctgaggtattcactgaggtccctgtgaccacaacta 310

                                                                       
Query: 121 tcccccagcctcacacagtaacctttcttgatgttagccagaatccatcactcacggccc 180
           ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 309 tcccccagcctcacacagtaacctttcttgatgttagccagaacccaccactcacggccc 250

                                                            
Query: 181 tgggatgcttgctgttggagggcccaaatccaatttctttccatgtccc 229
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tgggatgcttgctgttggagggcccaaatccaatttctttccatgtccc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 629
Length adjustment: 9
Effective length of query: 220
Effective length of database: 620
Effective search space:   136400
Effective search space used:   136400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no410_m02.g1 MSMg01no410_m02.g1 CHROMAT_FILE:
MSMg01no410_m02.g1 PHD_FILE: MSMg01no410_m02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:35 2005
         (522 letters)



>mm_chr12_114245894_114246815
          Length = 922

 Score = 1009 bits (522), Expect = 0.0
 Identities = 522/522 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacctggtctacagagtgagttcttggatagacagggttacacagagagaccctgtctca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacctggtctacagagtgagttcttggatagacagggttacacagagagaccctgtctca 260

                                                                       
Query: 61  gaaaacaaaacaaaaaacaacaaaaacaaacaaacacaagagagacaaagagacacagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaaacaaaacaaaaaacaacaaaaacaaacaaacacaagagagacaaagagacacagag 320

                                                                       
Query: 121 agacagagacggagaacttaatgtgtatgggtattgtgcctgcttgtatgtttacacacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agacagagacggagaacttaatgtgtatgggtattgtgcctgcttgtatgtttacacacc 380

                                                                       
Query: 181 acgtttatgtctggtaccaaaagagtccagaagaggctgtctgattcccttagctgtagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acgtttatgtctggtaccaaaagagtccagaagaggctgtctgattcccttagctgtagt 440

                                                                       
Query: 241 tgcagatggttgaaagatgttttgtgggttctgggaatcgaacccaggtcttcttcaaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcagatggttgaaagatgttttgtgggttctgggaatcgaacccaggtcttcttcaaga 500

                                                                       
Query: 301 gcaaacagcgctcttaaccatgcagcaacttctcaacccctatggcattttcttacagca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcaaacagcgctcttaaccatgcagcaacttctcaacccctatggcattttcttacagca 560

                                                                       
Query: 361 gcctgacttacaacacactatgtatgcaaagcatttgagtcattgtttgagggttagggg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcctgacttacaacacactatgtatgcaaagcatttgagtcattgtttgagggttagggg 620

                                                                       
Query: 421 cagagactcctcctgactatcttatgactctgaatgctgttaactttgactagtttcatc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cagagactcctcctgactatcttatgactctgaatgctgttaactttgactagtttcatc 680

                                                     
Query: 481 atttttccaggtgttccccttgcatttcattggcttattaaa 522
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atttttccaggtgttccccttgcatttcattggcttattaaa 722


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space:   466944
Effective search space used:   466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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