BAC Information

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BAC

Clone NameMSMg01-410O06
Chromosome12 (Build37)
Map Location 45,761,247 - 45,761,488
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039059, ENSMUSG00000066507, LOC100039081, LOC664854, Dnajb9, LOC100039062, Pnpla8, Nrcam, EG620025
Downstream geneStxbp6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-410O06.T7 (MSMg01no410_o06.b1)MSMg01-410O06.TJ (MSMg01no410_o06.g1)
ACCAG508034AG508035
length774769
length of high quality
(start - end)
246 (74 - 319)164 (243 - 406)
definitionCHROMAT_FILE: MSMg01no410_o06.b1 PHD_FILE: MSMg01no410_o06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:45 2005CHROMAT_FILE: MSMg01no410_o06.g1 PHD_FILE: MSMg01no410_o06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGGGCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAGGCCTTCTCTGACTATATAGTGAGTTTACAGAGAACCAT
GGCTATATAGCAAAATACTACTTCAGGATAATAACGATAAGCTAAAATTT
TAAAAGATTTATGATGTGGAAATACTTAAAAATTGGATAGGTTTACCTTG
AAAGTTCAGGGAGATATGCAGAGAAGTGATTAATGCATAACCAAGAGGGG
ATCCTGTGTTAGGATGATACTCTGGCTAAGTCATTGGGCTGATGGTTGAA
ACTCTAAGGATGACACAAGATTATTATCCTATAAAGGGGCCTAAATTATT
ACCTACAGTTCTACAATAATTAAAAACCTCATAAAGAAAGAAGATTAATT
AAAGGTGAATGATCAGAAATAACCCATGGGAAAAGAACAATGGAGCAAGA
AATTGAAGAGAGATAGTATGAGAACCCTGATAACGCTTGTATCTATTGTG
TGTACATCATGTTCAGTGAAGACTAGATGCTATGGGCCGCCCTATCTACG
CTCTCCTTCTCCTCCTCTCCTTTCTTCTATTTTCCCCCTCCCCCTTTTCC
TTCGTTTACCTCCTCCTCCATATCGTTCGTATTCCTTCTATCGCATCTCT
CCCTCTTATTGTCCACTCCTTTCTTTTCTTACTGGCTTTCCTCTTCTTTC
GTCTCTTTCCCTTTTCCTCTTTTCTCCTCTCTTTTTCCCCCCTTTTCCCC
TCCTTTTTTCCCTCCTTTCCTTTT
NNAACAATGAAGTGGGTAGCCTGGCGGCGCCTGGTTTCGTAATTTAGGTG
AACTATAGAAGTTTCGCCGGAATTCATGAAGTCATTGTTTTTAATGGCTG
AGTAGTACTCCATTGTGTAACCACATTTTCTGTATCCACTCCTCCTGTTG
AGGAACATCTGGGTTGTTTTCAGCTTCTGGTCTATGATAAATAAGGCTGA
TATGAACATAGTGGAGCATATGTCCTTGTTATATTTTGGAGTATCTTTTA
GGTATCCTACCACCAATGGAGGAGTTTTTCTTTCTCCACATCCATGCCAG
CTATCAGCTGTTACCTGATTTTTTTTTTTATCTTAGTCAATCTGACCGGT
GTGAGGTGGAAATCTCAGGGTTGTTTTGATTTGCATTTCCCTGATGACTA
AGGATGTTAAACATTTTGCGTTTACTACTACATGATGAACCTATTACAGG
GTTGTTGCATTAGGACGGTTGAGAGCCACTGATGTACTTTGCCCTCCACA
GTCATTGTAGGCTTACTATACCTTTTCCTTTTGCCTACCATCCATTCGCC
TTTGACCATTGTTACATCATCGCTTCGATTACCCTAAGTTCTTTTCTCAT
TACCTTTATCTACCACTTGTCATACCTTTTGTTTGCACCTTTTTCCTCCT
TTGCGTCCACCCTTTACTTTCACTTCCCTCCCTTTTCCCCACTCATTTGC
CTCCCGTATTACCCCCCCTTTTCCCTCTCTTTTCCTTCATTCCACCTTCC
TATTATTTCCCCTTTTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no410_o06.b1 MSMg01no410_o06.b1 CHROMAT_FILE:
MSMg01no410_o06.b1 PHD_FILE: MSMg01no410_o06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:45 2005
         (246 letters)



>mm_chr12_45761043_45761688
          Length = 646

 Score =  445 bits (230), Expect = e-129
 Identities = 239/242 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   atagtgagtttacagagaaccatggctatatagcaaaatactacttcaggataataacga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 atagtgagtttacagagaaccatggctatatagcaaaatactacttcaggataataacga 264

                                                                       
Query: 65  taagctaaaattttaaaagatttatgatgtggaaatacttaaaaattggataggtttacc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taagctaaaattttaaaagatttatgatgtggaaatacttaaaaattggataggtttacc 324

                                                                       
Query: 125 ttgaaagttcagggagatatgcagagaagtgattaatgcataaccaagaggggatcctgt 184
           ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 325 ttgaaaggtcagggagatatgcagagaaatgattaatgcataaccaagaggggatcctgt 384

                                                                       
Query: 185 gttaggatgatactctggctaagtcattgggctgatggttgaaactctaaggatgacaca 244
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gttaggatgacactctggctaagtcattgggctgatggttgaaactctaaggatgacaca 444

             
Query: 245 ag 246
           ||
Sbjct: 445 ag 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)