Query= MSMg01no411_a14.b1 MSMg01no411_a14.b1 CHROMAT_FILE:
MSMg01no411_a14.b1 PHD_FILE: MSMg01no411_a14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:57 2005
(547 letters)
>mm_chr12_96816426_96817372
Length = 947
Score = 917 bits (474), Expect = 0.0
Identities = 529/550 (96%), Gaps = 6/550 (1%)
Strand = Plus / Plus
Query: 1 aagcatacaagggtgaatcaagtatgctggcacacggctctaatcccagaactcaaagtc 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 198 aagcatacaagggtgaatcaagtatgctggcacacgactctaatcccagaactcagagtc 257
Query: 61 taagtaaggacaatgatcatttctaggccaacttgg---aagttgtatgaccctgtctca 117
|||||||||||||||||||||||||||||||| ||| | || ||||||||||| ||||
Sbjct: 258 taagtaaggacaatgatcatttctaggccaacctgggttatgtagtatgaccctgcctca 317
Query: 118 atttcaaagaaaagaaggaaacatataagaacaaataatataggggagaatcatattttt 177
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 318 atttcaaagaaaagaaggaaacatataagaagaaataatataggggagaatcatattttt 377
Query: 178 taggttaaattctctgttgagttttcataattttcacatgactttccctggggtaacatg 237
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 taggttaaattctctgttaagttttcataattttcacatgactttccctggggtaacatg 437
Query: 238 aaaaatatttatttatcctacatagaacactaacatcaggtcaaaaatagtcaccctagt 297
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 aaaaatatctatttatcctacatagaacactaacatcaggtcaaaaatagtcaccctagt 497
Query: 298 gtgtattgaggaccaatgtatctattgaggtttctcattgggtcaccaatgaaatattac 357
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 498 gtgtattgaggaccaatgtatctattgagttttctcattgggtcaccaatgaaagattac 557
Query: 358 ttacagacaaatgagtgacttcaagactggtgaatcaccaaaaagaccacccctgtgtgg 417
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 558 ttacagacaaatgagtgacttcaaggctggtgaatcaccaaaaagaccacccctgtgtgg 617
Query: 418 gtgacaacagggaagcttgctctctagacattcctgtccattccagaagcatatgatcta 477
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct: 618 gtgacaacagggaagcttgctccctagacattcctgtccatcccagaagcatatgatcta 677
Query: 478 taaatgtttccctcccaagcagcagctcttcactgcttatatagctgtgaaattgttctc 537
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 678 taaatgtttccctcccaagcagcagctcttcactgcttacatagctgtgaaattgttct- 736
Query: 538 ctgattctga 547
||||||||
Sbjct: 737 --gattctga 744
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space: 503169
Effective search space used: 503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no411_a14.g1 MSMg01no411_a14.g1 CHROMAT_FILE:
MSMg01no411_a14.g1 PHD_FILE: MSMg01no411_a14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:57 2005
(565 letters)
>mm_chr12_97006857_97007821
Length = 965
Score = 917 bits (474), Expect = 0.0
Identities = 507/522 (97%), Gaps = 8/522 (1%)
Strand = Plus / Minus
Query: 48 actagatgggaaatgttttcaagaagaagaaattgaagaagaaaagaatccctcaaccac 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 965 actagatgggaaatgttttcaagaagaagaaattgaagaagaaaagaatccctcaaccac 906
Query: 108 tgtcagaattctttcaacttgaatgtctcctcaacacattacatattttgtccagctgtc 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 905 tgtcagaattctttcaacttgaatgtctcctcaacacattacatattttgtccagctgtc 846
Query: 168 tcaaattctctttggaactcgacaaagcataattaaaaacaaacaaacaaataagtgagc 227
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 tcaaattctctttggaactagacaaagcataattaaaaacaaacaaacaaataagtgagc 786
Query: 228 aaacaaacaa----acatacttttatacataagagaaatgcagctttgagtcaacaagga 283
|||||||||| ||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 785 aaacaaacaaacacacaaac----atacataagagaaatgcagctttgagtcaacaagga 730
Query: 284 ttttgatgacaaagagatctataggtgctgggtgaaagcagtcatgtaattaattaaaag 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 ttttgatgacaaagagatctataggtgctgggtgaaagcagtcatgtaattaattaaaag 670
Query: 344 ggacttcttcatcatctctcaggcatgaagctttcctcccagtttaccacagtgtctcct 403
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 ggacttcttcatcgtctctcaggcatgaagctttcctcccagtttaccacagtgtctcct 610
Query: 404 ccacaggcaaagtcatagactgcctgctgttttcgatcaagcattgtttgatgtggtgaa 463
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 609 ccacaggcaaagtcatagaccacctgctgttttcgatcaagcattatttgatgtggtgaa 550
Query: 464 gaaattcttaggccatatttcttctaggcacaggttgataaacaccatggggcatttgaa 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 gaaattcttaggccatatttcttctaggcacaggttgataaacaccatggggcatttgaa 490
Query: 524 aattagctttggtgaccctaattattaatccagagtttggca 565
||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 489 aattatctttggtgaccctaattattaatccagagtttggca 448
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space: 530025
Effective search space used: 530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
