Query= MSMg01no411_k23.b1 MSMg01no411_k23.b1 CHROMAT_FILE:
MSMg01no411_k23.b1 PHD_FILE: MSMg01no411_k23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:49 2005
(548 letters)
>mm_chr12_11955885_11956831
Length = 947
Score = 1007 bits (521), Expect = 0.0
Identities = 539/545 (98%), Gaps = 1/545 (0%)
Strand = Plus / Minus
Query: 4 ggaattctgctttgtgtcctgtgtaccatgtgtaaaggaacatacagtcatacaagggtt 63
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 ggaattctgctttgtggcatgtgtaccatgtgtaaaggaacatacagtcatacaagggtt 576
Query: 64 gtgtataacacaatttatgtcacagagattaaatcccagtatcatgctatcatataactg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 gtgtataacacaatttatgtcacagagattaaatcccagtatcatgctatcatataactg 516
Query: 124 agagttgaaattcaatttcccaacaacattctcagaattcaaaaggaaaggagagagtcc 183
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 515 agagttgaaattcaatttcccaacagcattctcagaattcaaaaggaaaggagagag-cc 457
Query: 184 tcactctagaaatagctacaccttcaactgtaggttagtagaaggtcaagctcaatgact 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 tcactctagaaatagctacaccttcaactgtaggttagtagaaggtcaagctcaatgact 397
Query: 244 catcagtaagaaattggacaacggatgatgtaattgaattgtatgaacctaatcctgagt 303
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 396 catcagtaagaaattggacaacggatgatgtaattgaattggatgaacctaatcctgagt 337
Query: 304 ataacactgctcttcatgggctgtaggctgaataaatgcaactatgatatttacaaagga 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ataacactgctcttcatgggctgtaggctgaataaatgcaactatgatatttacaaagga 277
Query: 364 agtcatcacttttgcctcttcagattttcatttaaatgtagtgtaattttgtgaaagaaa 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 agtcatcacttttgcctcttcagattttcatttaaatgtagtgtaattttgtgaaagaaa 217
Query: 424 caaacatgaatcttgtgtttgttacttttctaatattttgacaaaatacccagaacaaaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 caaacatgaatcttgtgtttgttacttttctaatattttgacaaaatacccagaacaaaa 157
Query: 484 gcaatagggagaggaggacttattttagttcaaagtttgagatacttccagtatgatggg 543
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 acaatagggagaggaggacttattttagttcaaagtttgagatacttccagtatgatggg 97
Query: 544 gaagt 548
|||||
Sbjct: 96 gaagt 92
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 947
Length adjustment: 10
Effective length of query: 538
Effective length of database: 937
Effective search space: 504106
Effective search space used: 504106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no411_k23.g1 MSMg01no411_k23.g1 CHROMAT_FILE:
MSMg01no411_k23.g1 PHD_FILE: MSMg01no411_k23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:49 2005
(530 letters)
>mm_chr12_11787829_11788757
Length = 929
Score = 917 bits (474), Expect = 0.0
Identities = 516/532 (96%), Gaps = 5/532 (0%)
Strand = Plus / Plus
Query: 1 actaaatatagagaatgtgtcaatatt--cttccgtggcctgcactaacataagagttaa 58
||||||| |||||||||| |||| | |||| ||||||||||||||| ||||||||||
Sbjct: 201 actaaatgtagagaatgtctcaa---tgccttctgtggcctgcactaacctaagagttaa 257
Query: 59 gaggtgaagagtcttgttaccaataaccagaacttcagatacccgtttctttcaaatggg 118
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 258 gaggtgaagagtcttgttaccaataaccagaacttcagatacctgtttctttcaaatggg 317
Query: 119 aggaaatttagtaatatttgtagagaaagtaagcaacatttgttaatatattcattgctt 178
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 318 aggaaatttagtaatatttgtagagaaagtaagcaatatttgttaatatattcattgctt 377
Query: 179 tcgcgtaaggtcaattgttccatgtgctgtgctctcctggggtcaggatgacggtgtctg 238
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tcacgtaaggtcaattgttccatgtgctgtgctctcctggggtcaggatgacggtgtctg 437
Query: 239 agatctgaggactatgtgctcttctgtggtcttagaaacaggaacacggctttgcggaaa 298
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 agatctgaggacaatgtgctcttctgtggtcttagaaacaggaacacggctttgcggaaa 497
Query: 299 atcctatcagactttgaatctgccctttcatcttaaggtaagccagacgtttcagtcttt 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 atcctatcagactttgaatctgccctttcatcttaaggtaagccagacgtttcagtcttt 557
Query: 359 aaagaagaatgagaatgtggcttgtttattgcgagaacacaggtaatctgaaaaggaaac 418
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 558 aaagaagaatgagaatgtggcttgtttattgcgagaacataggtaatctgaaaaggaaac 617
Query: 419 agtttctaaattaaagatggtatctcatatattggagaaaacaagaatgtgaatgctgcc 478
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 agtttttaaattaaagatggtatctcatatattggagaaaacaagaatgtgaatgctgcc 677
Query: 479 ttgtgtggcaggcaggggaggtagtgactctggaatgggggtggggcttatt 530
|||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 678 ttgtgtggcaggcaggggaggtagtgactctggaatgggggtggcgcttatt 729
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 929
Length adjustment: 10
Effective length of query: 520
Effective length of database: 919
Effective search space: 477880
Effective search space used: 477880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
