Query= MSMg01no412_c11.b1 MSMg01no412_c11.b1 CHROMAT_FILE:
MSMg01no412_c11.b1 PHD_FILE: MSMg01no412_c11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:25 2005
(245 letters)
>mm_chr12_57884091_57884730
Length = 640
Score = 377 bits (195), Expect = e-109
Identities = 229/243 (94%), Gaps = 5/243 (2%)
Strand = Plus / Plus
Query: 1 atacatgtttaaagttgaatcttcagtatgaatttaccggaataattaaagtttttctaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atacatgtttaaagttgaatcttcagtatgaatttaccggaataattaaagtttttctaa 260
Query: 61 tgtgtctaaaaaaaaataaataaacctatgacttctcctttctaaagcacagaatgtaag 120
|||||||||||| |||||||||||||||||||||||||||||| ||| ||| ||||
Sbjct: 261 tgtgtctaaaaa-----aaataaacctatgacttctcctttctaaagtacaaaatataag 315
Query: 121 tttggctgtctgtatcatttaggaggtggttctatggctccatccctgggaagctgttat 180
||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||| |
Sbjct: 316 tttggctgtctgtgtcatttaggaggtgggtctgtggctccatccctgggaagctggcag 375
Query: 181 agagctctactcactaagcaggctgctccattcaggccaagggagaaagcattcacgtcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 agagctctactcactaagcaggctgctccattcaggccaagggagaaagcattcacgtcc 435
Query: 241 aga 243
|||
Sbjct: 436 aga 438
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 640
Length adjustment: 9
Effective length of query: 236
Effective length of database: 631
Effective search space: 148916
Effective search space used: 148916
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no412_c11.g1 MSMg01no412_c11.g1 CHROMAT_FILE:
MSMg01no412_c11.g1 PHD_FILE: MSMg01no412_c11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:26 2005
(453 letters)
>mm_chr12_58051524_58052376
Length = 853
Score = 868 bits (449), Expect = 0.0
Identities = 452/453 (99%)
Strand = Plus / Minus
Query: 1 catagcagcattctcatggttgaggaatgttggatttcaaagggaactccactccatggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 catagcagcattctcatggttgaggaatgttggatttcaaagggaactccactccatggg 594
Query: 61 cgttcatcactcaccactgaatcttcttcacagcactcttcctcatagatgccagagaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 cgttcatcactcaccactgaatcttcttcacagcactcttcctcatagatgccagagaag 534
Query: 121 acttggccttgccacttctactgtaacccttgacatttaaaggaaacaaacaccgttctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 acttggccttgccacttctactgtaacccttgacatttaaaggaaacaaacaccgttctg 474
Query: 181 tagttgacaatattttgtgtccttaaaaagagatgttgatgcccaggacaaaaataagag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 tagttgacaatattttgtgtccttaaaaagagatgttgatgcccaggacaaaaataagag 414
Query: 241 gtctttttaaaagtagctaattcacttaggttctgcccaaagatatatattccatctatg 300
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 gcctttttaaaagtagctaattcacttaggttctgcccaaagatatatattccatctatg 354
Query: 301 tctctgtacatgtggacctgtccaccatcaaacataaaccgttgcgagcatttcccagtc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 tctctgtacatgtggacctgtccaccatcaaacataaaccgttgcgagcatttcccagtc 294
Query: 361 tacagtgctcaccttaccatatcacctgtctctttcttggaccttggaatcatgtcaggg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 tacagtgctcaccttaccatatcacctgtctctttcttggaccttggaatcatgtcaggg 234
Query: 421 atcttgtcatttctttctgatagaggacttttt 453
|||||||||||||||||||||||||||||||||
Sbjct: 233 atcttgtcatttctttctgatagaggacttttt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space: 373449
Effective search space used: 373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
