Query= MSMg01no412_d04.b1 MSMg01no412_d04.b1 CHROMAT_FILE:
MSMg01no412_d04.b1 PHD_FILE: MSMg01no412_d04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:29 2005
(632 letters)
>mm_chr12_5480557_5481587
Length = 1031
Score = 1122 bits (580), Expect = 0.0
Identities = 616/628 (98%), Gaps = 3/628 (0%)
Strand = Plus / Minus
Query: 6 gaattcaccacataccgttcccaacttctaatgcttcaacccaaacactgtgacttctga 65
|||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct: 831 gaattcaccacagaccgttcccaacttctaatgcttcagcccacacactgtgacttctga 772
Query: 66 tggtgcaaaagaggaacatacacagtagcatttttactctttccagtgctgttgatataa 125
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 771 tggtgcaaaagaggaacatactcagtagcatttttactctttccagtgctgttgatataa 712
Query: 126 tgtatagctgtctctatctggcatagacaggcagcagggcagtgaattgcagcttccagt 185
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 tgtatagttgtctctatctggcatagacaggcagcagggcagtgaattgcagcttccagt 652
Query: 186 gagtcatgtgacctc-gaggaaacaactggacactacaaagttaccattgattagttcca 244
|||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 gagtcacgtgacctcag-ggaaacaactggacactacaaagttaccattgattagttcca 593
Query: 245 gtgataagattaagagaacaaagttcattttcattaggatattttcaacacaaagggtgt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 gtgataagattaagagaacaaagttcattttcattaggatattttcaacacaaagggtgt 533
Query: 305 tctaagaagggacccccattgtaagaacaaggacacattctatgctatagctcatagtgg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 tctaagaagggacccccattgtaagaacaaggacacattctatgctatagctcatagtgg 473
Query: 365 agttaaggaagtcagacaaatcccacctttgtgtatatgaagctcaagggcagacaaaga 424
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 472 agttaaggaagtcagacaaatcccatctttgtgtatatgaagctcaagggcagacaaaga 413
Query: 425 aatgttgcacagatgtaagtcaggatcagttatatcccataagactggggtcaagtacaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 aatgttgcacagatgtaagtcaggatcagttatatcccataagactggggtcaagtacaa 353
Query: 485 ctgacttggaagcacagtggcaaagcctctttgaggtgttagaaacatttcttagatatc 544
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 352 ctgacttggaagcagagtggcaaagcctctt-gaggtgttagaaacatttcttagatatc 294
Query: 545 tgggtggtgttcaatcaaatgcatggtttgaggaaatccactgtatcatatgtgaatgtt 604
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 293 tgggtggtgttcaatcaaatgcatggtttgaggaaatccactatatcatatgtgaatgtt 234
Query: 605 atacctcaaaaagatttttaaacatctt 632
||||||||||||||||||||||||||||
Sbjct: 233 atacctcaaaaagatttttaaacatctt 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1031
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1021
Effective search space: 635062
Effective search space used: 635062
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no412_d04.g1 MSMg01no412_d04.g1 CHROMAT_FILE:
MSMg01no412_d04.g1 PHD_FILE: MSMg01no412_d04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:29 2005
(460 letters)
>mm_chr12_5263964_5264829
Length = 866
Score = 822 bits (425), Expect = 0.0
Identities = 453/471 (96%), Gaps = 16/471 (3%)
Strand = Plus / Plus
Query: 1 tcacttctggatacccagcatgtctcccactctcctccttagtgatgtggatggaggagg 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcacttctggatacccagcacgtctcccactctcctccttagtgatgtggatggaggagg 260
Query: 61 aggacactggtaattagagtgggctgagtagcagtctggcttatcacaccaagctgtgca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggacactggtaattagagtgggctgagtagcagtctggcttatcacaccaagctgtgca 320
Query: 121 atgtacccattctggcctcagttggctcttggagctagagtctggcagagtcaaaaagct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgtacccattctggcctcagttggctcttggagctagagtctggcagagtcaaaaagct 380
Query: 181 ttaagttgaaacagcacatctgagctgtgaggtctgcagtcatcgtc------ccccccc 234
||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 ttaagttgaaacagcacatctgagctgtgaggtctgcagtcatcgtctcccccccccccc 440
Query: 235 ccccgccccttttt-----aataaaagctcgctttatagctttatatggcctaagtgacc 289
||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct: 441 ccccgcccc-----ggccaaataaaagctcgttttatagctttatatggcctaagtgacc 495
Query: 290 cttgactcttgcaactctacccattgttcaaggccagcagcaggtcatgagattaggaag 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 cttgactcttgcaactctacccattgttcaaggccagcagcaggtcatgagattaggaag 555
Query: 350 caaggacaattcccaggtcaaagtagatactctcaagctggatttagagaaatctaaggc 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 caaggacaattcccaggtcaaagtagatactctcaagctggatttagagaaatctaaggc 615
Query: 410 ccatatatcggtattttagtgacccctgaaagggccccacctgcttcacgt 460
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ccatatatcggtattttagtgacccctgaaagggccccacctgcttcacgt 666
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 866
Length adjustment: 10
Effective length of query: 450
Effective length of database: 856
Effective search space: 385200
Effective search space used: 385200
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
