NGGGTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTCTATGTGCAGTCTAGGAAGGGAGACCTCACCAGAAGAGG
ACTGTAACAGGCCTTGGTCTAGGACACACAGCTGCAGAACTAGCAGCTAT
TTGCCTTATTTAAGCCATTCTGTAGGTGGTATTTAGGTATGATAGCTCAA
GTACAGTGACACATGTTCTATTTCTGGTCTAACTGCCTCAGTGCCATCAG
GTTGCACCCTTTCTACTTTACAGATGAGGGCAAGATCATACATCTCTTTA
TTAGGGAAGCTAGGGCTGGATTTCTATTTTATCGGAGTCTCACAATCTTT
AATTTTGATAGACTTGTATTTCAAACCTCTTTTCAAAGGTAAGAATCAAT
CTTGCCTAAGGCTAAATCTATACATATGGTTATTTTGGGGTCAGGTATTT
TATCTGACAAAAAAGAAACAGCCCTTTAAAAATTCCAATGAGATTTGTAT
TTTGATGCCCTTTAATTAAGTTCTATACCACCTAAATGATCGATGCTTTT
CTCAGTCTTGACTTTAAGCATGATTATACCTAATTCTTTTATATATGATT
ACTGTATGATTCTGTAATTCAGTCTTCCACATCTCTCTTTTCTATGCTAA
TTAATACACTGTTTTTTCCGGCTTTTTTATGAAAAAGGCCCATGTAATAA
AAGATTAGCATTGGATCTCCTTCCTCTGTACCANCAAAATGGAT

NNNNCCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAAACTTTTA
TCATGAATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACGAG
ATGATAATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATT
GATGGATTTTTGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTA
CTTGGTCAGGATGGATGATTTCTTTAATGTGTTCTTGGATTCGGTTAGCG
AGAATTTTATTAAGGATTTTTGTTTTGATATTCATAAGAGAAATTGGTCT
GAAGTTCTCTATCTTTGTTGGATCTTTCTGTGGTTTAGGTATCAGAGTAA
TAGTGGCTTCATAAAATGAGTTGGGTAGAGTACCTTCTACTTCTATCTTG
TGAAATAGTTTGTGCAGAACTGGAATTATATCTTCTTTGAAGGTCTGATA
GAACTCTGCACTAAACCCATCTGGTCCTGGGCTTTTTTTTGTTGGGAGAC
CACTAATAACTTGCTTCTATTTCTTCAGGGAAATGGAATTGTTCCCAACG
CTTTTTTGCCCCTCTTTTACCCTCTTTCCTTTTATCCCGCCCTCAAATTT
CCCCTTTTCTTCCCTCATTTTCAATTTTCCCCTCCCTTTCTTTCTTTCTT
ACCCTTCCCCTATCCCTACTTCCCCTTTTCCCCCTTTTTCCTTTCCCTTC
TTTCCTTTC

Query= MSMg01no412_h08.b1 MSMg01no412_h08.b1 CHROMAT_FILE:
MSMg01no412_h08.b1 PHD_FILE: MSMg01no412_h08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:49 2005
         (555 letters)



>mm_chr12_59113920_59114874
          Length = 955

 Score = 1035 bits (535), Expect = 0.0
 Identities = 547/551 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttctatgtgcagtctaggaagggagacctcaccagaagaggactgtaacaggcc 64
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 915 gaattcttctatgtgcagtctaggaagggagacctcaccagaagaagactgtaacaggcc 856

                                                                       
Query: 65  ttggtctaggacacacagctgcagaactagcagctatttgccttatttaagccattctgt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 ttggtctaggacacacagctgcagaactagcagctatttgccttatttaagccattctgt 796

                                                                       
Query: 125 aggtggtatttaggtatgatagctcaagtacagtgacacatgttctatttctggtctaac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 aggtggtatttaggtatgatagctcaagtacagtgacacatgttctatttctggtctaac 736

                                                                       
Query: 185 tgcctcagtgccatcaggttgcaccctttctactttacagatgagggcaagatcatacat 244
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 735 tgcctcagtgccatcaggttgtaccctttctactttacagatgagggcaagatcatacat 676

                                                                       
Query: 245 ctctttattagggaagctagggctggatttctattttatcggagtctcacaatctttaat 304
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 675 ctctttattagggaagctagggctggatttcaattttatcggagtctcacaatctttaat 616

                                                                       
Query: 305 tttgatagacttgtatttcaaacctcttttcaaaggtaagaatcaatcttgcctaaggct 364
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 tttgaaagacttgtatttcaaacctcttttcaaaggtaagaatcaatcttgcctaaggct 556

                                                                       
Query: 365 aaatctatacatatggttattttggggtcaggtattttatctgacaaaaaagaaacagcc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 aaatctatacatatggttattttggggtcaggtattttatctgacaaaaaagaaacagcc 496

                                                                       
Query: 425 ctttaaaaattccaatgagatttgtattttgatgccctttaattaagttctataccacct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ctttaaaaattccaatgagatttgtattttgatgccctttaattaagttctataccacct 436

                                                                       
Query: 485 aaatgatcgatgcttttctcagtcttgactttaagcatgattatacctaattcttttata 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 aaatgatcgatgcttttctcagtcttgactttaagcatgattatacctaattcttttata 376

                      
Query: 545 tatgattactg 555
           |||||||||||
Sbjct: 375 tatgattactg 365


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space:   515025
Effective search space used:   515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)