BAC Information

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BAC

Clone NameMSMg01-413N10
Chromosome12 (Build37)
Map Location 48,614,158 - 48,614,434
singlet/doubletsinglet
Overlap genenone
Upstream geneNova1, LOC100039190
Downstream geneEG664891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-413N10.T7 (MSMg01no413_n10.b1)MSMg01-413N10.TJ (MSMg01no413_n10.g1)
ACCAG510277AG510278
length773746
length of high quality
(start - end)
276 (37 - 312)507 (67 - 573)
definitionCHROMAT_FILE: MSMg01no413_n10.b1 PHD_FILE: MSMg01no413_n10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:31:39 2005CHROMAT_FILE: MSMg01no413_n10.g1 PHD_FILE: MSMg01no413_n10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:31:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGTT
GTATTGCAAATATATGCTTATATATATAAATAAATGCTAAATTCTTGGCT
GCAGCATATTTGTACTTTGAATTGCATTTTGAGGTGCTCTCCTGACTTGC
AAGTGGGTGCTTTCTTTTGAGGTACTTGTTGTAATTGTCATTGCAGTCTA
ATGAACATCTACTTGTAGGACTTTCACTGTCTCTTTTCTTTTTAATTTTC
ATCTATGTGTGTGTAGTGTGTATGTGTTTGTGTGTATTTGTATATGTGTG
TGTGTTTGTGTATTTTTTTTTNNNNNNTNNNNTTTTTTTTTTTTTTTTTT
TTTTTTNTTTTTTTTTTTTTNNTTTNNTTTTTTTTTTTTNTTTTTTTTTT
TTTTTNTTNNNNNCCCCTTTTTTTTTTTTTTTTTNTTTNTNTTTTTTTTT
TATTTNTTTTTTTTTATTTTATTTTATTTTTTTNTTATTTTATTCTATAT
TTACCTATACTTTCTTTTTTCTCCCATACTTATTCTACTACTATTTCTCC
TTTCTTTCCCATACTCCTTAATTCCCCCCCTCCTATCTCTACTTATTTTC
TCCTATCCTCTATTTTTCCCTCTCACTTTCTCTCCCTTTCCCTTTTTTCC
TTCCATATTCCCCCCAATAATCTCCCCCCCCTCCTTTTTTCCTTTTTTTT
CATTTTCCACTTCCCTTCCTCCATTTACTTCTCTTTCCCTAATCTATTTC
TAATTCCCCTCTCTCCTTTTTTT
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCACC
TGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACA
ACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTC
AGGTGACAGCAGATGCTGGCGTGGGTGTGGAGAAAGAGGAACACTCCTCC
ATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGG
CGGTTCCTCAGAATTTTTGTACATAGTACTACCGGAGGATCCAGCAATAC
CTCTCCTGGGCATATATTCAGAAGATGCCCCAACTGGTAAGAAGGACACA
TGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAA
AGAACCCAGATGCCCCTCAACAGAAGAATGGATACAGAAAATGTGGTACA
TCCACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAA
TTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAAC
ACATTCACAAAGGAACTCCACAATATGTACTCACTGATAAGGGATATTTA
CTTCCAACCTAGGATACCCACGAAAAAGAAACCATTTCCTAAAACCTGAA
ACTCCGAAAAATGAAGAATGAAGTGGGGGTACTATGCCCCCCCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no413_n10.b1 MSMg01no413_n10.b1 CHROMAT_FILE:
MSMg01no413_n10.b1 PHD_FILE: MSMg01no413_n10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:39 2005
         (276 letters)



>mm_chr12_48613955_48614630
          Length = 676

 Score =  485 bits (251), Expect = e-142
 Identities = 269/277 (97%), Gaps = 4/277 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctgttgtattgcaaatatatgcttatatatataaataaatgctaaattcttggc 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctgttgtatggcaaatatatgcttatatatataaataaatgctaaattcttggc 263

                                                                       
Query: 64  tgcagcatatttgtactttgaattgcattttgaggtgctctcctgacttgcaagtgggtg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgcagcatatttgtactttgaattgcattttgaggtgctctcctgacttgcaagtgggtg 323

                                                                       
Query: 124 ctttcttttgaggtacttgttgtaattgtcattgcagtctaatgaacatctacttgtagg 183
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctttcttttgaggtgcttgttgtaattgtcattgcagtctaatgaacatctacttgtagg 383

                                                                       
Query: 184 actttcactgtctcttttctttttaattttcatctatgtgtgtgtagtgtgtatgtgttt 243
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 actttcactatctcttttctttttaattttcatctatgtgtgtgtagtgtgtatgtgttt 443

                                                
Query: 244 gtgtgtatttgtatatgtgtgtgtgt----ttgtgta 276
           |||||||||||||| |||||||||||    |||||||
Sbjct: 444 gtgtgtatttgtatgtgtgtgtgtgtgtgtttgtgta 480


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 676
Length adjustment: 9
Effective length of query: 267
Effective length of database: 667
Effective search space:   178089
Effective search space used:   178089
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)