BAC Information

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BAC

Clone NameMSMg01-413P10
Chromosome12 (Build37)
Map Location 95,293,613 - 95,294,119
singlet/doubletsinglet
Overlap genenone
Upstream gene2610022K04Rik-ps, EG633639
Downstream geneLOC217786
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-413P10.T7 (MSMg01no413_p10.b1)MSMg01-413P10.TJ (MSMg01no413_p10.g1)
ACCAG510371AG510372
length737754
length of high quality
(start - end)
641 (36 - 676)554 (64 - 617)
definitionCHROMAT_FILE: MSMg01no413_p10.b1 PHD_FILE: MSMg01no413_p10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:31:49 2005CHROMAT_FILE: MSMg01no413_p10.g1 PHD_FILE: MSMg01no413_p10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:31:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAAAT
ATTTTAGCAGCAGAAAAAAAATCATTAAATTATGTATAATACTCAAATAT
AAACATGAGTGGATTTATAGTATGTGACATTCATATAGATAACTCCACAG
ACATCATAAAGTATGTTCAAGTGTATTTCAAACATCATCAGAGTATTCTT
TAAAAGATACCCAGCATATTTATAAAGACTGTAAGACCTGAAATGGTGCA
GTATTTCCCACAGTATAATGTAATTAATGGCAAATATCCAAAATGAAAGA
ATGAAAGTCTTCAGATATATGTAATCTAAACAGGGCAGTGTGGTAGTCAC
AAGATAAATTAGGAAACATTTTTAGATGAATGTACATAAAAATACAATGT
AGTTTAACTTGTGGGATGCTGACTATACTTAAGGGACATTTTAAACAGTA
TATGGGTGTGTATTAGGAAAAGGAAGGCTGAAAATCATGACCTGAAAGTC
CAACTGGAAAAATTAGGGAAGAAAAGAATCAAATCCTGTAAGATTAGATT
TTTTTTAAACCTACTTTAATAAGGGTTCGAAAATGCATTGACATCCCTCC
CCTTTTAGCCCATTGTCCAAAGATAGGGGAGGACAAGAGGTGTGAACCTG
CTTAGGAATAGTTTCTGGGGGTGATTTTAGTCTCTGTCAGAATAGCAGAA
GTCAAACAAGAGTCAGCAGCCATGGCATAATCCAGCA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXATTACATAAACAACCAACAAACCCAGACACTACGGCA
GATGCCAACAAGAGCCTGCTAACAGGAGCCTGATATAGCTGTCTGCTGAG
GGGCTCTGCCAGTGCCTGGCAAATACAGAAGTGGATGCTCACAGCCATCC
ATTGAACAGAGCACAGGGTCCCCAATAAAGGAGCCAGAGAAAATACCCAG
GAACCTGAAGGGTCTGAAGCCCCATAGGAAGAACAACAATATGAACTACC
CAGTACCCCCCTTATTCTCCACTGGTTTAAACCACCAATTAAAGAAAACA
CATGATGGAACATATGGCTCTAGCTGTATATGTAGCATAGGATGGCCTAG
TCCGTCATCTATGGGAGGAGATGTCCTAGGTCCTGTGAAGGTTCTAGGGG
CTGGAGAGATGGCTCAGCGGGTAAGAGCACTGACTGCTATTCCCAAAGGT
CCTGAGCTCAAATCCCAGCAACTACATGGTGGCTCACAACCATCCATAAT
GAGATCTGACTCCCTCTTTTGCCAGGCAGTGGTGGTGCATGCCTTTAATC
CCAGCACTTGGGAGGTAGAGGCTGAGGTAGGTGGATTTCTGAGTTCGAGG
TCTACCTGGTCCACACAATGAGTTCCAGGACAGCCAGGGCTATACAGAGA
AAACCTGTCCTCGAAACCCCTCNATTTTTATTAATAATTAAAAACAAAAG
GTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no413_p10.b1 MSMg01no413_p10.b1 CHROMAT_FILE:
MSMg01no413_p10.b1 PHD_FILE: MSMg01no413_p10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:49 2005
         (641 letters)



>mm_chr12_95293613_95294651
          Length = 1039

 Score =  895 bits (463), Expect = 0.0
 Identities = 498/511 (97%), Gaps = 4/511 (0%)
 Strand = Plus / Minus

                                                                       
Query: 20  tagcagcagaaaaaaaatcattaaattatgtataatactcaaatataaacatgagtggat 79
           |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tagcagcag--aaaaaatcattaaattatgtataatactcaaatataaacatgagtggat 450

                                                                       
Query: 80  ttatagtatgtgacattcatatagataactccacagacatcataaagtatgttcaagtgt 139
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 449 ttatagtatgtgacattcatatagataactccacagacatcattaagtatgttcaagtgt 390

                                                                       
Query: 140 atttcaaacatcatcagagtattctttaaaagatacccagcatatttataaagactgtaa 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 atttcaaacatcatcagagtattctttaaaagatacccagcatatttataaagactgtaa 330

                                                                       
Query: 200 gacctgaaatggtgcagtatttcccacagtataatgtaattaatggcaaatatccaaaat 259
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 329 gacctgaaatggtgcagtatttcccacagtataatgtaactaatggcaaatatccaaaat 270

                                                                       
Query: 260 gaaagaatgaaagtcttcagatatatgtaatctaaacagggcagtgtggtagtcacaaga 319
           ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| 
Sbjct: 269 gaaagaacgaaagtcttcagatatatgtaatctaaatagggcagtgtggtagtcacaagc 210

                                                                       
Query: 320 taaattaggaaacatttttagatgaatgtacataaaaatacaatgtagtttaacttgtgg 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 taaattaggaaacatttttagatgaatgtacataaaaatacaatgtagtttaacttgtgg 150

                                                                       
Query: 380 gatgctgactatacttaagggacattttaaacagtatatgggtgtgtattaggaaaagga 439
           | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 gctgctgactgtacttaagggacattttaaacagtatatgggtgtgtattaggaaaagga 90

                                                                       
Query: 440 aggctgaaaatcatgacctgaaagtccaactggaaaaattagggaagaaaagaatcaaat 499
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| 
Sbjct: 89  aggctgaaaatcatgacctgaaattccaactggaaaaattagggaagaaaagaatcaaag 30

                                          
Query: 500 cctgtaagattagattttttttaaacctact 530
           ||||||||||||||||||||  |||||||||
Sbjct: 29  cctgtaagattagatttttt--aaacctact 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1039
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1029
Effective search space:   649299
Effective search space used:   649299
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)