NTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAACAGAAGATTCGATCAACCAGGAGAGAAATCTTAGTTACTTCA
AAAGAAAGATCATTTATAGGAGAAATAAATAATAAAACAATAAGAAGAAA
ATCTGTAGCCTTATAGGGCAAAACAAAAAAAAAAAAAGGAAAAGTTTAAT
GAATGAATGATGAAAGAAAATTGAATATAAAATTTGTTTAACACAATGGT
AGAAAACTTTCCATATGATATCCACGAAGCCCAAAGAGTTTCAAAAAAAA
CTGCACATACAACAAACAAAAACTCCACTGAGTCACATAATAAACAAAAG
TCAATTATAAGAATTTTAAAAGCAACAATAGAGAAGTAAATTATTCCAGA
GTAGAGAATCCCCAACGACCATTCACTGATTTCTCAAAAGAAATGTTTTG
TCTGAAAGACAGATAACACATTAAAAGAGATGAAAAATAAGAGCATAGCA
ACTAGCAAAAATATTCTTCAAAAAAGAAAGATAAAGACTCCCTAAGACAA
ATAGATGCGCAGGGAGTTGATTGCCACATGGTCTGCCATGCTAAAACTGC
TAAGTGTAGGTATTTAAAGCATAAGTATGCTAACAACTAATACAACATAT
CATATGAGAGTACNAAGAATATCACTGTAAAACTAAGAATACAGTTAAAT
TTGACATAGAGAAAATATTGATACTCAGAATAATGGCAAAAACCTAACTA
TGAGAAAACAAACTTCAATTTTTAAATA

NCGATGAAATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTCAGAAATTCCCACCTGAGGAATACCGAATGGCAGA
GAAGCACCTGAAAAAATGTTCAACATACTTAATCATCAGGGAAATACAAA
TCAAAACAACCCTGCGATTCCACCTCACACCAGTCAGAATGTCTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAAC
ACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAAT
CCGTCTGGCGGTTCCTCAGAAAATTGTATTTAGTACTACCGGAGGATCCA
GCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAA
GGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAA
GCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATG
TGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATT
TATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTG
AGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGT
GGATATTAGCCCAAAACCTATGATACCCCAGATATAAGATACAATTTCCT
AAACACATGAAACTCTAAAAAAATGAAGACTGAAGTGTGGACCCTATGCC
CCTCCTTAAAAG

Query= MSMg01no414_j13.b1 MSMg01no414_j13.b1 CHROMAT_FILE:
MSMg01no414_j13.b1 PHD_FILE: MSMg01no414_j13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:41 2005
         (599 letters)



>mm_chr12_39267485_39268483
          Length = 999

 Score =  942 bits (487), Expect = 0.0
 Identities = 573/611 (93%), Gaps = 22/611 (3%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaacagaaga-ttcgatcaaccaggagagaaatcttagttacttcaaaagaaaga 63
           ||||||||||||| | || ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 205 gaattcaacagaaaagtt-gatcaaccaggagagaaatcttagttacttc-aaagaaaga 262

                                                                       
Query: 64  tcatttataggagaaataaataataaaacaataagaagaaaatctgtagccttatagggc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tcatttataggagaaataaataataaaacaataagaagaaaatctgtagccttatagggc 322

                                                                       
Query: 124 aaaac-aaaaaaaaaaaaaggaaaagtttaatgaatgaatgatgaaagaaaattgaatat 182
            |||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
Sbjct: 323 taaacaaaaaaaaaaaaaaggaaaagtttaatgaaggaatgatgcaagaaaattgaatgt 382

                                                                       
Query: 183 aaaatttgtttaacacaatggtagaaaactttccatatgatatccacgaagcccaaagag 242
           ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 383 aaagtttgtttaacacaatggtagaaaactttccatatgatatccatgaagcccaaagag 442

                                                                       
Query: 243 tttcaaaa------------aaaactgcacatacaacaaacaaaaactccactgagtcac 290
           | ||||||            ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 443 tctcaaaaaaaaaaaaaaacaaaactgcacatacaacaaacaagaactccactgagtcac 502

                                                                       
Query: 291 ataataaacaaaagtcaattataagaattttaaaagcaacaatagagaagtaaattattc 350
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ataataaacaaaagtcaattataagaattttaaaagcaacaatagagaagtaaattattc 562

                                                                       
Query: 351 cagagtagagaatccccaacgaccattcactgatttctcaaaagaaatgttttgtctgaa 410
           ||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||| ||
Sbjct: 563 cagagtagagaatccccaacgactattcattgatttctcaacagaaatgttttgtctaaa 622

                                                                       
Query: 411 agacagataacacattaaaagagatgaaaaataagagcatagcaactagcaaaaatattc 470
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 agacagaaaacacattaaaagagatgaaaaataagagcatagcaactagcaaaaatattc 682

                                                                       
Query: 471 ttcaaaaaagaaagataaagactc----cctaagacaaatagatgcgcagggagttgatt 526
           ||||||||||||||||||||||||    ||||||| |||||||||| |||||||||||||
Sbjct: 683 ttcaaaaaagaaagataaagactcactccctaagaaaaatagatgcacagggagttgatt 742

                                                                       
Query: 527 gccacatggtctgccatgct-aaaactgctaagtgtaggtatttaaagcataagtatgct 585
           |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 743 gccacatggtctgccatg-tgaaaactgctaagtgtaggtatttaaagcataagtatgct 801

                      
Query: 586 aacaactaata 596
           |||||||||||
Sbjct: 802 aacaactaata 812


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space:   582521
Effective search space used:   582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)