BAC Information

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BAC

Clone NameMSMg01-414K11
Chromosome12 (Build37)
Map Location 16,615,317 - 16,828,444
singlet/doubletdoublet
Overlap geneNtsr2, Greb1, E2f6
Upstream geneLOC217409, Trib2, LOC100043268, EG432636, LOC100043273, Lpin1
Downstream geneRock2, Pqlc3, 2410004P03Rik, EG668514, Kcnf1, LOC100043299, Pdia6, Atp6v1c2, Nol10, LOC672501, Odc1, LOC100042522, LOC100042528, Hpcal1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-414K11.T7 (MSMg01no414_k11.b1)MSMg01-414K11.TJ (MSMg01no414_k11.g1)
ACCAG510898AG510899
length755762
length of high quality
(start - end)
545 (49 - 593)244 (331 - 574)
definitionCHROMAT_FILE: MSMg01no414_k11.b1 PHD_FILE: MSMg01no414_k11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:46 2005CHROMAT_FILE: MSMg01no414_k11.g1 PHD_FILE: MSMg01no414_k11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,828,024 - 16,828,444)(16,615,317 - 16,615,560)
sequence
NGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTAAGTCTCATGAAGTTTTATGTATTTGTAATTCGAAGAACT
TCTTTAAACCAAATATTGATTACAGCAATTTCTGGAGAAAAAACATTAAT
AAAGCCCGAATCCTGAACATAAATACTACTCATGAAGGTAGATATCCCCT
TGTCCTTGGGGTGGGGCTGGGGGTAGATGTTACAAATCCCCAGCAGATGC
CCATAGCCACCGACTAACAGCAAACCATACATAGACTGTGCATACAGTAC
CACAGTAAGGTTAAATTTANATCCATGCACAGTAAGAAATCAATAGTAAG
AGTATAATTATAACATACAGCAGACCGCAAATTATTTAAAAACAAGTTAC
TTGTAGAATTTTTCCTTAATATTTTTAGATGATAGCTGCAGCAGAGATTA
CAGAAAGCAAAGCCACAGGAAAGGGGAGCCCACTATGATCAAATCCCCAG
CTACAGTGCATTCAGTGTAAATTCTCACTCACTGTTACTTAGCTCTATGA
GAGCTTGAGAGGTAAACAGTCACGGTTTGGGTGAGCGTCCTCCAGAAGGG
AGGGAAACCACGTCTGCAAACAGGAATAGCTCCCAGGAAGCTCTCGGTGT
CGTTTTGTTTCTACCAAAATTTCCTTTAAGAACACTGACTGAAAACTGCC
TTTCAGGTGTTCCCGGGGTGGCAGATACAGCGGTCTCTCCGTGCATTTGT
TTTGN
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCAATCAAGACTTTGTGACTCCAGCGA
GCCATTCCCAAGTCATCTCTGCTGCATGCCCTAAGCCTGCGGATTTGATG
ATTTTTCTCTTTAATCTTCTGCTTCTGTCTGTCTGTGGCTTGTTTGTTCC
TTTACTTTTGCTCACTTTGGACTTAAAACTTTACCTCATTCAAAGCCCAA
AGCACGTCTAGGGTGGACATTCTCTATTCAGAACAGCCTTGGGGAAAAGG
GTCTCCCCGTCTCACCTTCAACCTTTCTGTAAGTATAACTACCCCCACCA
CCAGCAAACTACGTGGGTTCCATGAGAGGCTCTCAATGTGCTGCCCAACT
GGACTCCAAACGCAATGTTCTATTTGTACCCATGACTGTTAGGAATCACT
CTCCAGTAGGCAGCTATTGTTTTTTTTTTTTCACAACATATCTAAACTGG
GCCTGACACTCAGGTCTCAACAAATACTTTCTAAATGAATGACTAACATA
TCTTGAAGGGTCCTACCTGATTACAAATAGGCTTGTTATAATTACAAGTA
AACTCTCGTTTAAATATACGCTCATCACCCTGAATATAAATGAATGAACC
CTGCCACGAATATATAATGTTTCTCCCCCCTTGTCAAAAACCCTCTGATG
CCTAAATTGTGTCTAACCCACCATCCAGTAGTTCTTAGGAAAATATTACT
CTTTCCTCTAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no414_k11.b1 MSMg01no414_k11.b1 CHROMAT_FILE:
MSMg01no414_k11.b1 PHD_FILE: MSMg01no414_k11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:46 2005
         (545 letters)



>mm_chr12_16827500_16828444
          Length = 945

 Score =  785 bits (406), Expect = 0.0
 Identities = 417/421 (99%)
 Strand = Plus / Minus

                                                                       
Query: 125 atactactcatgaaggtagatatccccttgtccttggggtggggctgggggtagatgtta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 945 atactactcatgaaggtagatatccccttgtccttggggtggggctgggggtagatgtta 886

                                                                       
Query: 185 caaatccccagcagatgcccatagccaccgactaacagcaaaccatacatagactgtgca 244
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 885 caaatccccagcagatgcccaaagccaccgactaacagcaaaccatacatagactgtgca 826

                                                                       
Query: 245 tacagtaccacagtaaggttaaatttanatccatgcacagtaagaaatcaatagtaagag 304
           ||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||
Sbjct: 825 tacagtaccacagtaaggttaaatttataaccaggcacagtaagaaatcaatagtaagag 766

                                                                       
Query: 305 tataattataacatacagcagaccgcaaattatttaaaaacaagttacttgtagaatttt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 tataattataacatacagcagaccgcaaattatttaaaaacaagttacttgtagaatttt 706

                                                                       
Query: 365 tccttaatatttttagatgatagctgcagcagagattacagaaagcaaagccacaggaaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 tccttaatatttttagatgatagctgcagcagagattacagaaagcaaagccacaggaaa 646

                                                                       
Query: 425 ggggagcccactatgatcaaatccccagctacagtgcattcagtgtaaattctcactcac 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 ggggagcccactatgatcaaatccccagctacagtgcattcagtgtaaattctcactcac 586

                                                                       
Query: 485 tgttacttagctctatgagagcttgagaggtaaacagtcacggtttgggtgagcgtcctc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 tgttacttagctctatgagagcttgagaggtaaacagtcacggtttgggtgagcgtcctc 526

            
Query: 545 c 545
           |
Sbjct: 525 c 525


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space:   500225
Effective search space used:   500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no414_k11.g1 MSMg01no414_k11.g1 CHROMAT_FILE:
MSMg01no414_k11.g1 PHD_FILE: MSMg01no414_k11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:46 2005
         (244 letters)



>mm_chr12_16615117_16615760
          Length = 644

 Score =  464 bits (240), Expect = e-135
 Identities = 243/244 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagtataactacccccaccaccagcaaactacgtgggttccatgagaggctctcaatgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagtataactacccccaccaccagcaaactacgtgggttccatgagaggctctcaatgtg 260

                                                                       
Query: 61  ctgcccaactggactccaaacgcaatgttctatttgtacccatgactgttaggaatcact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgcccaactggactccaaacgcaatgttctatttgtacccatgactgttaggaatcact 320

                                                                       
Query: 121 ctccagtaggcagctattgttttttttttttcacaacatatctaaactgggcctgacact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctccagtaggcagctattgttttttttttttcacaacatatctaaactgggcctgacact 380

                                                                       
Query: 181 caggtctcaacaaatactttctaaatgaatgactaacatatcttgaagggtcctacctga 240
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 caggtctcaacaaatactttctaaatgaatgactaacatatcttgaagtgtcctacctga 440

               
Query: 241 ttac 244
           ||||
Sbjct: 441 ttac 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)