Query= MSMg01no414_p03.b1 MSMg01no414_p03.b1 CHROMAT_FILE:
MSMg01no414_p03.b1 PHD_FILE: MSMg01no414_p03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:10 2005
(480 letters)
>mm_chr12_106077028_106077910
Length = 883
Score = 868 bits (449), Expect = 0.0
Identities = 471/479 (98%), Gaps = 3/479 (0%)
Strand = Plus / Plus
Query: 5 gaattcaattcctgtctcctgtgacccagtgtctctccaggtaggtgcatgtcccaggat 64
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 205 gaattcaattcctgtctcctgtgacccagtgtctctccaggtaggcgcatgtcccaggat 264
Query: 65 gatgtcgttagaagtagggatgagagagaagatacaaagacctgaccagagctggaggga 124
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gatgtcgttagaagtggggatgagagagaagatacaaagacctgaccagagctggaggga 324
Query: 125 ccagagggacaaaccaagctgccaagagcagagaagccaccacaggggggcactctcata 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccagagggacaaaccaagctgccaagagcagagaagccaccacaggggggcactctcata 384
Query: 185 gcacagggcaccgtgagccagtactgggcacaggagaggtgggggcacaaagaggggaaa 244
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gcacagggcaccgtgagccagcactgggcacaggagaggtgggggcacaaagaggggaaa 444
Query: 245 gtgacattaaaggtatattatacagatgtcctaaaagcaaggagagaacgcatagggtgc 304
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 445 gtgacattaaaggtatattatacagatgtcctaaaagcaaggagagagcgcatagggtgc 504
Query: 305 ctgccaggctcctgttaccagtcatggtgtgatttctacccatgactgtgttccacatca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctgccaggctcctgttaccagtcatggtgtgatttctacccatgactgtgttccacatca 564
Query: 365 ctgcaggcctgggaacggctcccaaaggcgttcagggcctagggggtagagttgaggagc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctgcaggcctgggaacggctcccaaaggcgttcagggcctagggggtagagttgaggagc 624
Query: 425 cagcgtggtcactgagtgtcagcccccc-a--cccccacccccagctccagtctgagct 480
|||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||
Sbjct: 625 cagcgtggtcactgagtgtcagcccccccaggcccccccccccagctccagtctgagct 683
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 883
Length adjustment: 10
Effective length of query: 470
Effective length of database: 873
Effective search space: 410310
Effective search space used: 410310
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no414_p03.g1 MSMg01no414_p03.g1 CHROMAT_FILE:
MSMg01no414_p03.g1 PHD_FILE: MSMg01no414_p03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:10 2005
(298 letters)
>mm_chr12_106263308_106264007
Length = 700
Score = 553 bits (286), Expect = e-162
Identities = 296/300 (98%), Gaps = 2/300 (0%)
Strand = Plus / Minus
Query: 1 tcttgaagaaattgtttcttgtgg--aaaaaaaaaaattaagagtcttcatttcaagagg 58
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 500 tcttgaagaaattgtttcttgtggaaaaaaaaaaaaattaagagtcttcatttcaagagg 441
Query: 59 tgggagtggggggaggtagaactgagcattttagtgagtctcctgtcttatcctgtaagg 118
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tgggagtggggggaggaagaactgagcattttagtgagtctcctgtcttatcctgtaagg 381
Query: 119 ccagcagggggcactagcttgtcatctacagaagctggagccctgctgataatgtagtct 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ccagcagggggcactagcttgtcatctacagaagctggagccctgctgataatgtagtct 321
Query: 179 gggaatcggtaagtggcccagatttgtgctttcccctagtgccagaacctatcctatgga 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gggaatcggtaagtggcccagatttgtgctttcccctagtgccagaacctatcctatgga 261
Query: 239 gtagttaactcacgtgttttctattagagtcacaaaatggcatatataacggggtcattg 298
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gtagttaactcacgtgctttctattagagtcacaaaatggcatatataacggggtcattg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 700
Length adjustment: 9
Effective length of query: 289
Effective length of database: 691
Effective search space: 199699
Effective search space used: 199699
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
