Query= MSMg01no414_p24.b1 MSMg01no414_p24.b1 CHROMAT_FILE:
MSMg01no414_p24.b1 PHD_FILE: MSMg01no414_p24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:14 2005
(468 letters)
>mm_chr12_99291910_99292777
Length = 868
Score = 642 bits (332), Expect = 0.0
Identities = 402/442 (90%), Gaps = 30/442 (6%)
Strand = Plus / Minus
Query: 4 ggaattctagtctac----ttacctatgggatatttaaatttccaagaagtcattgcatt 59
||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 421 ggaattctagtctacagaat----tatgggatatttaaatttccaagaagtcattgcatt 366
Query: 60 atctctctgttcttgtagctaacagctgagataatcaatttacatatggaggtggaattt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 atctctctgttcttgtagctaacagctgagataatcaatttacatatggaggtggaattt 306
Query: 120 attttggcttgtggtttcagtttatgggcactggcctcatggcttctgtatgtgtgataa 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 attttggcttgtggtttcagtttatgggcactggcctcatggcttctgtatgtgtgataa 246
Query: 180 gtcagcgcatcatggtgcttagtagagctgaagagcaagattcacacacacacacacacc 239
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 gtcagcacatcatggtgcttagtagagctgaagagcaagattcacacacacacacacac- 187
Query: 240 cacacccacacacacacacacacacacacacatgcacacgaacttccacacacatgcaca 299
|||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 186 -------------acacacacacacacacacatgcacacgaacacccacccacatgcaca 140
Query: 300 cccacatgcacacacacccacatgcacacccacccacatgcacacccacccacatgcaca 359
|||||| |||||||||||||||||| |||||| |||||||| ||||||||||||||
Sbjct: 139 cccacacacacacacacccacatgcatacccac----atgcacacacacccacatgcaca 84
Query: 360 cacacatgcacacccacatgcacacacacccacatgcacacccacccacatgcacaccca 419
| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 83 cccacatgcacacccacatgcacac----ccacatgcacacccacccacatgcacaccca 28
Query: 420 catgcacacccacccacatgca 441
||||||||| ||||||||||||
Sbjct: 27 catgcacacacacccacatgca 6
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 128
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space: 392964
Effective search space used: 392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no414_p24.g1 MSMg01no414_p24.g1 CHROMAT_FILE:
MSMg01no414_p24.g1 PHD_FILE: MSMg01no414_p24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:14 2005
(546 letters)
>mm_chr12_99102873_99103819
Length = 947
Score = 948 bits (490), Expect = 0.0
Identities = 527/544 (96%), Gaps = 12/544 (2%)
Strand = Plus / Plus
Query: 1 cctataaaagaaaaggcagtattgggggtagtaaatgtagtctacatagctttttggact 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 194 cctataaaagaaaaggcagtattgggg-tagtaaatgtagtctacatagctttttggact 252
Query: 61 ctataaaaaaaagaacataactattttaattcttgaataaagaaacattttattatagtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ctataaaaaaaagaacataactattttaattcttgaataaagaaacattttattatagtc 312
Query: 121 ttatatttaatattatgttgtagtttattataacattttgttttattgtagtatttatta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ttatatttaatattatgttgtagtttattataacattttgttttattgtagtatttatta 372
Query: 181 tagt--------tttattatacctcattttaggaatttattattttaattataatgaacc 232
|||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tagtagtatagttttattatacctcattttaggaatttattattttaattataatgaacc 432
Query: 233 ataataaaa-ctcttgaggctaccaataaaatcaaaaattggaaagggacagtagataca 291
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ataataaaaactcttgaggctaccaataaaatcaaaaattggaaagggacagtagataca 492
Query: 292 ctgtgaatcactaaaagtgaactaatttcaacattgttt-gtgggagacactagtaacca 350
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 493 ctgtgaatcactaaaagtgaactaatttcaacatttttttgtgggagacactagtaacca 552
Query: 351 ctaataatgtcaatatctgaaaaatatggctaaagcattttagctaaagagtcaaatcaa 410
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ctaataatttcaatatctgaaaaatatggctaaagcattttagctaaagagtcaaatcaa 612
Query: 411 atttatgaaggataaaaaaatgcactctatgttctaaataccaaaagcaaaacaaaaaga 470
||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 613 atttatgaaggataaaaaa-tgcactctatgttctaaataccaaaaggaaaacaaaaaga 671
Query: 471 cttaaaaaatacagtctagcaatgtatgggaaaagcaacgagtgtaatatcacccaggaa 530
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 672 cttaaaaaatacagtctatcaatgtatgggaaaagcaaccagtgtaatatcacccaggaa 731
Query: 531 gttc 534
||||
Sbjct: 732 gttc 735
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 947
Length adjustment: 10
Effective length of query: 536
Effective length of database: 937
Effective search space: 502232
Effective search space used: 502232
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
