Query= MSMg01no415_a02.b1 MSMg01no415_a02.b1 CHROMAT_FILE:
MSMg01no415_a02.b1 PHD_FILE: MSMg01no415_a02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:15 2005
(552 letters)
>mm_chr12_93939515_93940467
Length = 953
Score = 710 bits (367), Expect = 0.0
Identities = 480/547 (87%), Gaps = 51/547 (9%)
Strand = Plus / Minus
Query: 5 gaattctttaaaagtagagatgcatgtgatgaaagaatctcaagtgtctcagaaacaaag 64
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 576 gaattctttaagagtagagatgcatgtgatgaaagtatctcaagtgtctcagaaacaaat 517
Query: 65 atggaaaccaacagtcattgctagagccaagaaatgcgaaatctcagcaaatattgactc 124
||||||||||||| | | |||||||||||||||||| |||||||||||||||||||||||
Sbjct: 516 atggaaaccaacaataactgctagagccaagaaatgagaaatctcagcaaatattgactc 457
Query: 125 tgaagtgtaacatcattagaaaaataatcatttgaaataattccaaatgaaatagatttt 184
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 456 tgaagtgtaacatcattagaaaaataatcacttgaaataattccaaatgaaatagatttt 397
Query: 185 atgaaatgacataaataaaaatgtttgtggttagattcaggaaatgggtagaaatcattc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 atgaaatgacataaataaaaatgtttgtggttagattcaggaaatgggtagaaatcattc 337
Query: 245 cttcttcagaattcgaaagctttaccccagaccactgtcaatgctgacttatacatgagg 304
||||||||||||| |||||||| |||||||||||||||||||| ||||||| |||||||
Sbjct: 336 cttcttcagaattagaaagcttcaccccagaccactgtcaatgatgacttacacatgaga 277
Query: 305 acccttgttcgtattcttacaatgatttttcaagattag-ttttgaacgtttttgtcatg 363
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 276 accctggttcgtattcttacaatgatttttcaagattagtttttgaacgtttttgtcatg 217
Query: 364 agtactgtattttacctttcttatcataatgatttctcatgctacaaggcttccaaagct 423
||||||||| |||| ||| || ||
Sbjct: 216 agtactgta-ttta-------------------------------aag-----ca---ct 197
Query: 424 acaaagtgaagctaccctcacacttctctctaccaactcctcatatggcctcccactccc 483
| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 ------t----ctaccctcacacttctctctaccaactcctcatatggcctcccactccc 147
Query: 484 tcttcagttcatgaattcttaattactgctcttacttgaacagtaattgaacacacttgt 543
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 146 tcttcagttcatgaattcttaattactgctcttacttgaacaataatttaacacacttgt 87
Query: 544 gtgtgtg 550
|||||||
Sbjct: 86 gtgtgtg 80
Score = 116 bits (60), Expect = 4e-30
Identities = 63/64 (98%)
Strand = Plus / Minus
Query: 374 tttacctttcttatcataatgatttctcatgctacaaggcttccaaagctacaaagtgaa 433
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tttacctttcttatcacaatgatttctcatgctacaaggcttccaaagctacaaagtgaa 685
Query: 434 gcta 437
||||
Sbjct: 684 gcta 681
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 552
Length of database: 953
Length adjustment: 10
Effective length of query: 542
Effective length of database: 943
Effective search space: 511106
Effective search space used: 511106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no415_a02.g1 MSMg01no415_a02.g1 CHROMAT_FILE:
MSMg01no415_a02.g1 PHD_FILE: MSMg01no415_a02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:15 2005
(482 letters)
>mm_chr12_93779970_93780850
Length = 881
Score = 888 bits (459), Expect = 0.0
Identities = 477/483 (98%), Gaps = 3/483 (0%)
Strand = Plus / Plus
Query: 1 tattaacctttgtaattatattttctaattccagaatgagacagacagacttaaagacaa 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 tattaacctttgtaattatattttctaattccagaatgagacaaacagacttaaagacaa 260
Query: 61 tgagataccttgtgaattgtcacattaacatagataagatttttttttttgtttttggac 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 261 tgagataccttgtgaattgtcacattaacatagataagatttttttttt-gtttttgaac 319
Query: 121 agagaataaacagcagaaatgtaaagtgacaaatggaaatttgtgtattttttttt-ctg 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 320 agagaataaacagcagaaatgtaaagtgacaaatggaaatttgtgtattttttttttctg 379
Query: 180 caacatcaacttcatggagtttctaccataaattggctggaaagcagtttatgaagaaat 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 caacatcaacttcatggagtttctaccataaattggctggaaagcagtttatgaagaaat 439
Query: 240 gatatggtgactgtcttctgtaagctccttacattgatcaggtaaagtgattaagcttac 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 440 gatatggtgactgtcttctgtaagctccttacattgatcaggtaaagtgattaagcctac 499
Query: 300 atccatcatcagcacaattaatcagaagttacagccgctcgttctcgaatgctgattcat 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 atccatcatcagcacaattaatcagaagttacagccgctcgttctcgaatgctgattcat 559
Query: 360 ctgtacctcaggtgcatgcatctcaggtattaggtccatatgacacatgcatccatcagt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ctgtacctcaggtgcatgcatctcaggtattaggtccatatgacacatgcatccatcagt 619
Query: 420 actgtatgggcattggcatgccttaatgcaattatagagtaggtaggtgttttgtttgtt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 620 actgtatgggcattggcatgccttaatgcaattatagagtaggtaggtgtttt-tttgtt 678
Query: 480 tgt 482
|||
Sbjct: 679 tgt 681
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 881
Length adjustment: 10
Effective length of query: 472
Effective length of database: 871
Effective search space: 411112
Effective search space used: 411112
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
