Query= MSMg01no415_e11.b1 MSMg01no415_e11.b1 CHROMAT_FILE:
MSMg01no415_e11.b1 PHD_FILE: MSMg01no415_e11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:37 2005
(245 letters)
>mm_chr12_118789925_118790570
Length = 646
Score = 310 bits (160), Expect = 7e-89
Identities = 214/247 (86%), Gaps = 26/247 (10%)
Strand = Plus / Plus
Query: 1 aatataggaaagaggnccttttagtggagatcaggctaactttct-agtctcaaatcacc 59
||||||||||||||| |||||||||||||||||||||| |||||| | ||||||| ||||
Sbjct: 201 aatataggaaagaggtccttttagtggagatcaggctagctttctga-tctcaaaccacc 259
Query: 60 ctccttgtgatgccccaaggaacctgtcattggctttactgtggtattagaagacttctc 119
|||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 260 ctccttgtgatgccccgaggaacctgtcgttggctttactgtggtgttagaagacttctc 319
Query: 120 ttggatgagctatcctgtt-taaggttggttccttggctttgtctgccctggttccctgt 178
||||||||||||||||||| ||||||||||||| ||||
Sbjct: 320 ttggatgagctatcctgttctaaggttggttcc-----------------------ctgt 356
Query: 179 cttcctctctctagctttctggtaggctgttgtcttggtacctcttctgaatcagctccc 238
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 357 cttcctctctctagctttctggtaggctgttgtcctggtacctcttctgaatcagctccc 416
Query: 239 tactgtc 245
|||||||
Sbjct: 417 tactgtc 423
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 646
Length adjustment: 9
Effective length of query: 236
Effective length of database: 637
Effective search space: 150332
Effective search space used: 150332
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no415_e11.g1 MSMg01no415_e11.g1 CHROMAT_FILE:
MSMg01no415_e11.g1 PHD_FILE: MSMg01no415_e11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:37 2005
(237 letters)
>mm_chr12_118986965_118987602
Length = 638
Score = 383 bits (198), Expect = e-111
Identities = 228/238 (95%), Gaps = 1/238 (0%)
Strand = Plus / Minus
Query: 1 catataatcagcagggaggtccatgatcagaggtcaataatgaggcagcctttcccgtca 60
||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||| |||
Sbjct: 438 catataatcagcagggaggtccaggatcagagatcaataaggaggcagcctttcccttca 379
Query: 61 cttgtag-acccacaaatctcaggtgcatatctgagcttggtgtactaggagacaatagg 119
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 cttgtagaacccacaaatctcaggtgcatatctgagcttggtgtactaggagacaatagg 319
Query: 120 tctactgggaggagtttgttgctcactgtctcgaagtggcttacattggggcatctttag 179
|| |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct: 318 tccactgggaggagtttgttgctcactgtctcgaagtggtttacattggggcatcaagag 259
Query: 180 atgcttttgaagtaaccgaactctcacaagtggggactactcctgacatcagctttta 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 atgcttttgaagtaaccgaactctcacaagtggggactactcctgacatcagctttta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 638
Length adjustment: 9
Effective length of query: 228
Effective length of database: 629
Effective search space: 143412
Effective search space used: 143412
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
