Query= MSMg01no417_e12.b1 MSMg01no417_e12.b1 CHROMAT_FILE:
MSMg01no417_e12.b1 PHD_FILE: MSMg01no417_e12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:07 2005
(583 letters)
>mm_chr12_50585564_50586546
Length = 983
Score = 1089 bits (563), Expect = 0.0
Identities = 575/579 (99%)
Strand = Plus / Minus
Query: 5 gaattcttctgtccctatcttcaagattttaatcttcaatacacaagcacaatgtatctt 64
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 gaattcttctgaaactatcttcaagattttaatcttcaatacacaagcacaatgtatctt 724
Query: 65 ctacaacaagacacatatatatcataatattctctaaaataattactgaagtcttaacaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 ctacaacaagacacatatatatcataatattctctaaaataattactgaagtcttaacaa 664
Query: 125 aaaaagattctaagggatgggtatttgtaaaattgaaacacagttcttatgtcatggtaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 aaaaagattctaagggatgggtatttgtaaaattgaaacacagttcttatgtcatggtaa 604
Query: 185 ttcactttgaaatgttttaataattccaattttaaaaactcctcagaataaagtaaaacc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 ttcactttgaaatgttttaataattccaattttaaaaactcctcagaataaagtaaaacc 544
Query: 245 taagcctgagatgatcttgaaagtacaatgtctttgactgaagaaatcaattctactagt 304
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 543 taagcctgagatgatcttgaaagtacaatgcctttgactgaagaaatcaattctactagt 484
Query: 305 agacttttgatcatttaaagcagaaaggaatatctgcttcattttcagcaggacaaggcc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 agacttttgatcatttaaagcagaaaggaatatctgcttcattttcagcaggacaaggcc 424
Query: 365 acattaaagccagaccattccatcaaaggagcttgattatgttctcagtgttttaaatta 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 acattaaagccagaccattccatcaaaggagcttgattatgttctcagtgttttaaatta 364
Query: 425 tgcatacgatgggtgacacaaatacatgtttaagtggttgcaaatttaaaaaatcaatat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tgcatacgatgggtgacacaaatacatgtttaagtggttgcaaatttaaaaaatcaatat 304
Query: 485 tcccaaagaactaaaattatgcccaatcataaataaaaattaattcacttgcatattttg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tcccaaagaactaaaattatgcccaatcataaataaaaattaattcacttgcatattttg 244
Query: 545 atctacaacttatgctagaagagaaatatctttttgcat 583
|||||||||||||||||||||||||||||||||||||||
Sbjct: 243 atctacaacttatgctagaagagaaatatctttttgcat 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space: 557529
Effective search space used: 557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no417_e12.g1 MSMg01no417_e12.g1 CHROMAT_FILE:
MSMg01no417_e12.g1 PHD_FILE: MSMg01no417_e12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:07 2005
(490 letters)
>mm_chr12_50494038_50494927
Length = 890
Score = 905 bits (468), Expect = 0.0
Identities = 487/496 (98%), Gaps = 6/496 (1%)
Strand = Plus / Plus
Query: 1 cagtatctgaggaaactttgataataggaagaactattgtgtttgctctattaaaatgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtatctgaggaaactttgataataggaagaactattgtgtttgctctattaaaatgtg 260
Query: 61 ctgaatgaataattagagactgggatgagtgttgaaaaattcagagcaagaataaggtgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgaatgaataattagagactgggatgagtgttgaaaaattcagagcaagaataaggtgg 320
Query: 121 taattttattatttaatacttcaataatttctataattaataatgtgattttaaaagctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taattttattatttaatacttcaataatttctataattaataatgtgattttaaaagctg 380
Query: 181 gcaatgctttcttagga-aaaaaaaagagtacttggccaaccttatcaaaaatattctgg 239
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcaatgttttcttaggagaaaaaaaagagtacttggccaaccttatcaaaaatattctgg 440
Query: 240 gaaaaattaagtaaaatcgaatagaattgtcagtaggtattgctcgttttttgttttgtt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaaaattaagtaaaatcgaatagaattgtcagtaggtattgctcgttttttgttttgtt 500
Query: 300 tt-----ttatttatctatttctattctgggaaaaattgttaattaaacatggcaaactc 354
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 501 ttgttttttatttatctatttctattctgggaaaaaatgttaattaaacatggcaaactc 560
Query: 355 cgattgcacgttggaagactaaaatcgatcatttctgcatcaatagtgttatgtattact 414
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cgattgcaggttggaagactaaaatcgatcatttctgcatcaatagtgttatgtattact 620
Query: 415 acattgatttgtgttcatttatgcagaggtttcagctattttcttcccatatttcagtgt 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acattgatttgtgttcatttatgcagaggtttcagctattttcttcccatatttcagtgt 680
Query: 475 ctccctctttattatt 490
||||||||||||||||
Sbjct: 681 ctccctctttattatt 696
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space: 422400
Effective search space used: 422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
