BAC Information

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BAC

Clone NameMSMg01-417H12
Chromosome12 (Build37)
Map Location 99,151,031 - 99,307,547
singlet/doubletdoublet
Overlap genenone
Upstream geneEG628277, LOC382626, LOC100039743, LOC667732, LOC628351, LOC100039770
Downstream geneLOC667746, Galc, Gpr65, Kcnk10, Spata7, Ptpn21, Zc3h14, Eml5, LOC100039845, Ttc8, EG667779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-417H12.T7 (MSMg01no417_h12.b1)MSMg01-417H12.TJ (MSMg01no417_h12.g1)
ACCAG513041AG513042
length768773
length of high quality
(start - end)		469 (70 - 538)435 (77 - 511)
definitionCHROMAT_FILE: MSMg01no417_h12.b1 PHD_FILE: MSMg01no417_h12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:21 2005CHROMAT_FILE: MSMg01no417_h12.g1 PHD_FILE: MSMg01no417_h12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,307,079 - 99,307,547)(99,151,031 - 99,151,465)
sequence
NNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCACCCTTCACACCCACACCGCCACCCCATCACCTCATCGGAA
TAGATTCCAGTGGCTGGAGAGCTTTCTGAAGGGGTCCATTGTGATGAGCC
AAAGACATACCAATCATTCAGGGAATTCCAAGGGTCTCAAGAATCTTTAA
GCCAGGAACCTGAGGCCAAACCATGTGTGTATATATTTATATATTTATCA
CTCTGAAGTAGCATTATAGTCTTTTTTGGTTTCTCCATGCACACCCTTGA
GCTCCTTGGTTTCTGTTTTGTTCCAGTGGCTGAATCTCCAGCTTCTCACT
GATTGTAAGTGCCAGCCACTCTCCACCAAACTCCTTCCAAAGAAGTCCTG
TGATTAAGGCAGCTGGAACTGTCTTTTACTGCTTGCTGTTAGGGCCCAGC
TGACATACACTTGAAGAACTGCAGGGAGGGCACCACCCAAATGGGACCTA
GAGTGCTGTCTGCATATGTCATTATGTGAAGGAGTGTGTTTGCAATGTTT
CATGTGGGTGTAAAATTCCAATTTACTTCTCTAATAAACCCTTCAACAAT
GGACCTGCTCCCAATTTAGCTGCACATTATTATAGCTAAATATTGCTTGC
TACAAAAAGAACTTCTTTTGAGCTCCTAAGAATACAACATCGAAAATCAC
CTGGAGGAAAACAAATGGTGCCCTTAAGTCGCGAAAGAAAATCCCTGGTG
TTTGGGTGTACAGGGTGN

NNCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTATGAAATACTGTCCTCTGGATAT
GACCTGGCCATTGGAGTCCAAGTTCACAGCTGCTGTGGTTACTTGAACAA
ATTAGAGCCTGTCACCTTCCTGCATGATGGTGGAGTGGCACTTGAGGCCC
CACCCCCTAGCTGAGGACCTCTTGGCAGTTAATGGCTTCTGAGGCAGAGG
GAGTCTTTCTTTTAAGAATGTAGGTTCTGGTAAAGTGCCAGTGATCCAGT
AGTAATTAACCTCATGTCCTCTGGGACAGGAGTGGGGGTACTTTGATGTT
ACCTGAAAATCCAGGCAGACTTTAATGTTTCTCAGTTGGGAAGATTCACA
TAAACTAGCATGGTGATGGTGAGTTCTGGATTACCAGTGGATTCGTTAAT
ACTGAGAGGATGACATTCTTTCTCATGCTTTGATCATAAAAATTTAAATG
ACCCTGCCCACAGTTATGACAGCATGTATGCTCCAGTTTACTAAGACACA
TCCTTTGGTCTCTTTCTCCTACCCCGGAAACTATATTCTATTATGTCATT
CACAGAGCCCGAGTTTGAATTTTATTTACCCCCCGCAGACCCAACTTATT
TTTTTATCCTCGCCCACACACTTTTAACAACCCTCTGCTTTTGCTTTCCC
ATTGGCCCACAATATTCTTTCCCGTTTTTTTTCTTCCCCCCCCCAATTTT
AATTTCCCGCTCTCTTTTTTTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no417_h12.b1 MSMg01no417_h12.b1 CHROMAT_FILE:
MSMg01no417_h12.b1 PHD_FILE: MSMg01no417_h12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:21 2005
         (469 letters)



>mm_chr12_99306710_99307578
          Length = 869

 Score =  868 bits (449), Expect = 0.0
 Identities = 464/469 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cccacaccgccaccccatcacctcatcggaatagattccagtggctggagagctttctga 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 838 cccacaccgccaccccatcacctcatcagaatagattccagtggctggagagctttctga 779

                                                                       
Query: 61  aggggtccattgtgatgagccaaagacataccaatcattcagggaattccaagggtctca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 aggggtccattgtgatgagccaaagacataccaatcattcagggaattccaagggtctca 719

                                                                       
Query: 121 agaatctttaagccaggaacctgaggccaaaccatgtgtgtatatatttatatatttatc 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 718 agaatctttaagccaggaacctgaggccaaaccatgtatgtatatatttatatatttatc 659

                                                                       
Query: 181 actctgaagtagcattatagtcttttttggtttctccatgcacacccttgagctccttgg 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 actctgaagtagcattacagtcttttttggtttctccatgcacacccttgagctccttgg 599

                                                                       
Query: 241 tttctgttttgttccagtggctgaatctccagcttctcactgattgtaagtgccagccac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 tttctgttttgttccagtggctgaatctccagcttctcactgattgtaagtgccagccac 539

                                                                       
Query: 301 tctccaccaaactccttccaaagaagtcctgtgattaaggcagctggaactgtcttttac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 tctccaccaaactccttccaaagaagtcctgtgattaaggcagctggaactgtcttttac 479

                                                                       
Query: 361 tgcttgctgttagggcccagctgacatacacttgaagaactgcagggagggcaccaccca 420
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 tgcttgccgttagggcccagctgacatacacttgaagaactgcagggagggcaccaccca 419

                                                            
Query: 421 aatgggacctagagtgctgtctgcatatgtcattatgtgaaggagtgtg 469
           |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 418 aatgggacctagagtgctgtctgcatatatcattatgtgaaggagtgtg 370


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space:   394281
Effective search space used:   394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no417_h12.g1 MSMg01no417_h12.g1 CHROMAT_FILE:
MSMg01no417_h12.g1 PHD_FILE: MSMg01no417_h12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:21 2005
         (435 letters)



>mm_chr12_99150831_99151665
          Length = 835

 Score =  795 bits (411), Expect = 0.0
 Identities = 429/435 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatgaaatactgtcctctggatatgacctggccattggagtccaagttcacagctgctgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatgaaatactgtcctctggatatgacctggccattggagtccaagttcacagctgctgt 260

                                                                       
Query: 61  ggttacttgaacaaattagagcctgtcaccttcctgcatgatggtggagtggcacttgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggttacttgaacaaattagagcctgtcaccttcctgcatgatggtggagtggcacttgag 320

                                                                       
Query: 121 gccccaccccctagctgaggacctcttggcagttaatggcttctgaggcagagggagtct 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 gccccaccccctagctgaggacctcttggcagttaatggcttctgagacagagggagtct 380

                                                                       
Query: 181 ttcttttaagaatgtaggttctggtaaagtgccagtgatccagtagtaattaacctcatg 240
           ||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 381 ttccttaaagaatgtaggttctggtaaagtgccagtgatccggtagtaattaacctcatg 440

                                                                       
Query: 241 tcctctgggacaggagtgggggtactttgatgttacctgaaaatccaggcagactttaat 300
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcccctgggacaggagtgggggtactttgatgttacctgaaaatccaggcagactttaat 500

                                                                       
Query: 301 gtttctcagttgggaagattcacataaactagcatggtgatggtgagttctggattacca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtttctcagttgggaagattcacataaactagcatggtgatggtgagttctggattacca 560

                                                                       
Query: 361 gtggattcgttaatactgagaggatgacattctttctcatgctttgatcataaaaattta 420
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtggatttgttaatactgagaggatgacattctttctcatgctttgatcataaaaattta 620

                          
Query: 421 aatgaccctgcccac 435
           |||||||||||||||
Sbjct: 621 aatgaccctgcccac 635


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 835
Length adjustment: 9
Effective length of query: 426
Effective length of database: 826
Effective search space:   351876
Effective search space used:   351876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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