NTTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTGTTTGCAGTATCAAGCAGACAAGGGGTAACAAGTCCCTTG
GGACTCTACTATAAAAGCACCTATATCTCGGCTTTCCTGACCAAATCATT
TACCAAAAGCCAGCCTCAAACAGCATCATCTTCCAATGTTTTGATGAAGT
GAAAAAAAAATTGAACTGAGGGTGTAGATTACATTCTCCACAGGAATGAC
TCCCTTGGTTTAATCCTCAGCAGCAGACATACACATATGTACATGTGTAC
ATTCATACAATATGTACATATACATGCACATACATTCATACATGGACATA
CATACATCTACATTTACCCATGCTTACCAAAAGTTAATTCAATAAATTAT
AACACAGAACATTACTTGTCACTATTTTTATTACATGGTTTGCAGTGCTG
GTGAAATAAATATGGTATGCCTTGCTAACTAGCCTATTGATCTGAAACTG
CTTTTCATTCCCAGTGGTTTTAGATAGAGAGATGGATAGATAGATAGATA
GATAGATAGATAGATAGATAGATAGATAGATAGATAGCTCGCTTTTTTCT
CGCTCCTTCCCTCTTTTCTCCTTTCTTCCCCTTTTCTTTTCTCCCCCCTC
TTTCCATATTTTTTATTTCTTCCTTTTCTCTCCCTTCCCCCTCCCTTACC
CCCCTCTATTCCTTTTTCCTCCTTTATACCCCCCCCTTTATTTAATCCTT
TCCCTCTCTTCTTCTTTC

NCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGG
CTGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGAAAATG
CAAATCAAAACAACCCTGAGAGTCCACCTCACACCAGTCAGAATGGCTAA
GATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAG
GAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGG
AAATCAGTCTGGCGGTTCCTCATATAATTGGACATAGTACTACTGGAGGA
TCCTGCAATACCTCTCCTGGGCATATATCCAGAAGATGTTCCAACTGGCA
AGAAGGACACATGCTCCACTATGTTTATAGCAGCCTTATTTATAATAGCC
AGAAGCTGGAAAGAACCCAGATGTCTCTCAACAGAAGAATGGATACAGAA
AATGTGGTACATTTATACAACGGAGTACTCCTCAGCTATTAAAAAGAATG
AATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGTCATCATCCTG
AGTGAGGTAACCCAATCCCAAAAAACCCTTGCTCAATATGCACTCTCTTG
ATAATTGGACTCTTGTCCCCCAAATTTCAAATATCCCCCATTTTATCATA
CCTTTTTGCTTAATCCTTGTAACCCTTTAAAAAATGTTCAACCCCCACGT
GTGGAATCCTCTCGCCCCTTTTTTATC

Query= MSMg01no417_j10.b1 MSMg01no417_j10.b1 CHROMAT_FILE:
MSMg01no417_j10.b1 PHD_FILE: MSMg01no417_j10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:30 2005
         (514 letters)



>mm_chr12_40613298_40614211
          Length = 914

 Score =  884 bits (457), Expect = 0.0
 Identities = 488/499 (97%), Gaps = 6/499 (1%)
 Strand = Plus / Plus

                                                                       
Query: 20  agtatcaagcagaca-aggggtaacaagtcccttgggactctactataaaagcacctata 78
           ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 218 agtatcaagcagacacaggg-taacaagtcccttgggactctactataaaagcacctata 276

                                                                       
Query: 79  tctcggctttcctgaccaaatcatttaccaaaagccagcctcaaacagcatcatcttcca 138
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 277 tcttggctttcctgaccaaatcatttaccaaaagccagcctcaaacagcatcatcttccg 336

                                                                       
Query: 139 atgttttgatgaagtgaaaaaaaaa--ttgaactgagggtgtagattacattctccacag 196
           |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 337 atgttttgatgaagtgaaaaaaaaaaattgaactgagggtgtagattacattctccacag 396

                                                                       
Query: 197 gaatgactcccttggtttaatcctcagcagcagacatacacatatgtacatgtgtacatt 256
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 397 gaatgactcccttggtttaatcctcagcagcagatatacacatatgtacatgtgtacatt 456

                                                                       
Query: 257 catacaatatgtacatatacatgcacatacattcatacatggacatacatacatctacat 316
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 catacaatatgtacatatacatgcacatacattcatacatggacatacatacatctacat 516

                                                                       
Query: 317 ttacccatgcttaccaaaagttaattcaataaattataacacagaacattacttgtcact 376
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 ttacccatgcttaccaaaagttaattcaataaattataacacagaacattacttgtcact 576

                                                                       
Query: 377 atttttattacatggtttgcagtgctggtgaaataaatatggtatgccttgctaactagc 436
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 atttttattacatggtttgcagtgctggtgaaataaatatggtatgccttgctaactagc 636

                                                                       
Query: 437 ctattgatctgaaactgcttttcattcccagtggttttagataga-gagatggatagata 495
           ||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||
Sbjct: 637 ctattgatctgaaactgcttttcattcccagtgattttagatagatg-gatggatagata 695

                              
Query: 496 gatagatagatagatagat 514
           ||||||| |||||||||||
Sbjct: 696 gatagatggatagatagat 714


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space:   455616
Effective search space used:   455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)