TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATTATTTTTGCATTCAACTTGCACTGCTACAGCTAAGGTTAATTATT
GATTTGTTTTATTCTGTGATTAAAGCCATTAGCTACGATTAGCACATGAT
GATGTTTATGCGTGCTTGAATATCAGCGGCCTTGCTTTTTATAGCAGGGC
CCAGGCTAAATGATTGCTCTATGGGACTGAAATCTACAATGGGGGTTCAC
AGAGTCACTGGAAGTAACCAGTGGTTTGTCCTTGTGATAGAAGAATAAAC
AGAATCTGATTGCTTCCACTAATTATTCTTCTTGAGCAGATACTGACCAG
AATTTACCTTTAATTAAATTTGGCCTCTGTCACCATCTGATTTTGAATGA
CCAGACTTCTGAGCAGGGGATAGAAAATCTGAGAGGGCTGCTATCTCCAT
GGACTGCAGACCCTGATTTTAAATGGGAAATAGAATGGGCTTTTGCTCTT
TGAAATGGTTGGAAATGCAACCAAAAGTCCAGAGCTTGTCTTTATCAGGG
CACAAGTCTGCTGATGAATGCAAGACATTGCATGTTTACAGCCTCTCTGT
GTAGGTCATACCTTTTCTGGCTTCTCCCTTTCTGGGGGAAGGTTGGCTTG
AACCTACCTGGCACCACTGCCATTGGGTTTCTGGATGCCAATGGTCAGGG
AGCACCTCCCACCTCCTTCTATCTGAATTCTCACCGGGCAGGACTTACAT
AGACCCAACTGTATACAGAA

ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTATGCCTTCTATTAGTAGACAACCAT
TGTTGGGCCAGTTTGGCCACAGCCTATAAGCCATGTTAGTAAATCCCCTT
ATATTTCTATCTAGATAGATCTATATCTATAGACACATGATAGATAGATA
GATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGA
TAGATGTTAAATACCTTCCTTTCNTTTGTTCTCTTCCTCTAGAAAACTCT
GGCTAATACAGATATTTGGAACCAAGAGTGGGGTTCAAACCCACACAGAC
ATGTGTCCATTTAATTTAGGAGTTCCTCCATGTATTCCAGATAGTGTCAT
AGGAAACAATACACAGTCATAAATTGGAAAAGACTGAGTTCAAACCATTA
TTCTATTATTTCCTATTGACATGATTTACAATACATAGATTTGCCCCTCT
TAGACCCTCAGTCCCCTTATCTATTATATATAGATGACTTTAACCATATT
TAGATTCTCACATCTTTTCAGTCCATTTTACATTCCTCCTTGAATCACTC
TGCGCCCTTACATTAAACTTCCCCCCCTGTTGTGAGCTCCTTGTTTTTTC
CCCCACTTCCCTTCTTCGTTTATTTCCCCTTCCCCCTCCCCCCCCTGTTT
TCGCGGTTTGTCCCCGGCGCGGCGCTTTTTTTTTTTTTCTTTCCCCCCCT
TTTATGCTATTTATCCTCCCTCTTTGTCCCCCTTGATTCCCT

Query= MSMg01no417_k20.b1 MSMg01no417_k20.b1 CHROMAT_FILE:
MSMg01no417_k20.b1 PHD_FILE: MSMg01no417_k20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:38 2005
         (613 letters)



>mm_chr12_5509713_5510725
          Length = 1013

 Score = 1131 bits (585), Expect = 0.0
 Identities = 603/609 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattatttttgcattcaacttgcactgctacagctaaggttaattattgatttgt 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattatttttgaattcaacttgcactgctacagctaaggttaattattgatttgt 264

                                                                       
Query: 65  tttattctgtgattaaagccattagctacgattagcacatgatgatgtttatgcgtgctt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttattctgtgattaaagccattagctacgattagcacatgatgatgtttatgcgtgctt 324

                                                                       
Query: 125 gaatatcagcggccttgctttttatagcagggcccaggctaaatgattgctctatgggac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaatatcagcggccttgctttttatagcagggcccaggctaaatgattgctctatgggac 384

                                                                       
Query: 185 tgaaatctacaatgggggttcacagagtcactggaagtaaccagtggtttgtccttgtga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgaaatctacaatgggggttcacagagtcactggaagtaaccagtggtttgtccttgtga 444

                                                                       
Query: 245 tagaagaataaacagaatctgattgcttccactaattattcttcttgagcagatactgac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tagaagaataaacagaatctgattgcttccactaattattcttcttgagcagatactgac 504

                                                                       
Query: 305 cagaatttacctttaattaaatttggcctctgtcaccatctgattttgaatgaccagact 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cagaatttacctttaattaaatttggcctctgtcaccatctgattttgaatgaccagact 564

                                                                       
Query: 365 tctgagcaggggatagaaaatctgagagggctgctatctccatggactgcagaccctgat 424
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tctgagcaggggatagagaatctgagagggctgctatctccatggactgcagaccctgat 624

                                                                       
Query: 425 tttaaatgggaaatagaatgggcttttgctctttgaaatggttggaaatgcaaccaaaag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||
Sbjct: 625 tttaaatgggaaatagaatgggcttttgctctttgaaatggttggaaatgcaactgaaag 684

                                                                       
Query: 485 tccagagcttgtctttatcagggcacaagtctgctgatgaatgcaagacattgcatgttt 544
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 685 tccagagcttgtctttatcagggcacaagtctgctgatgaatgcaagacattgcatcttt 744

                                                                       
Query: 545 acagcctctctgtgtaggtcataccttttctggcttctccctttctgggggaaggttggc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 acagcctctctgtgtaggtcataccttttctggcttctccctttctgggggaaggttggc 804

                    
Query: 605 ttgaaccta 613
            ||||||||
Sbjct: 805 ctgaaccta 813


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space:   604809
Effective search space used:   604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)