BAC Information

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BAC

Clone NameMSMg01-418B24
Chromosome12 (Build37)
Map Location 38,744,720 - 38,745,135
singlet/doubletsinglet
Overlap geneDgkb
Upstream geneMeox2, A530016O06Rik, LOC100043139
Downstream geneLOC668824, LOC100043142, Etv1, LOC100043145
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-418B24.T7 (MSMg01no418_b24.b1)MSMg01-418B24.TJ (MSMg01no418_b24.g1)
ACCAG513540AG513541
length770776
length of high quality
(start - end)		493 (45 - 537)438 (73 - 510)
definitionCHROMAT_FILE: MSMg01no418_b24.b1 PHD_FILE: MSMg01no418_b24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:14 2005CHROMAT_FILE: MSMg01no418_b24.g1 PHD_FILE: MSMg01no418_b24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCG
GAATTCTTTGTTTATCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT
TTCTGTAGTCCACCTTCTTGAGTTCTTTATACATATTGGATATTAGTCCC
CAATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCT
TTTTGTCTTATTGATGGTGTGTTTTGCTTTGCAGAAGCTTTGCAATTTTA
TGAGGTCCCATTTGTCGATTCTCGATATTACAGTACAAGCCATTGCTGTT
CTATTCAGGAATTTTTGCCCTGTACCCATATCCTTGAAGCTTTTCTCTAC
TTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTTGAGTTCCTTAA
TCCACATAGATTTGACCTTAGTACAAGGAGATAGGAATGGATCAATTTGC
ATTCTTCTACAGGATAACCTCCGGTTGTGCCAGCACCATTTATTGAAAAT
GCTGTCTTTTTCCACTGGATGGTTTTTGTTCCCTTGTCAAAGATCAAGTG
ACCATAGGTGTTTGGGTTCGTTTCTGGGTCTTCATTCTATTCCATTGGTC
TACCTGTCTGTCGCTGTACCAGTACCCTGCAGGTTTTTATCATAATGCTC
TGAAGACAGCTTTTAGTCATGCATGGTGATTCTACCTGAGAATATTTTAA
TCCCTGAAACAAGATTTTGGTACCCACATTTTTTTGTTATTCCCCAAGAA
TTCTCAAATTGCCCTTCCTT

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTGATTCATAAGAGTGATCAAGTCTCT
TCACTTCCTCATAACTTCATCCTATCACCTGTTTTCATTTATTTTTCAAA
TTTTCTTATTTTGTGATCATGCTATCTTTGACTTTTATTGTGGTGTAAAC
AGATCACATTAATTACATTATTATACAATACCTTATCATTGCATTATTTG
GAAATTGTCATGGAATAAGAACTATAAGCTGCTCACTTTTATGTTATATT
GTCTTATATTTATATTATGTTTTATCGTGTTGTTATATTTACATTGAAGG
AATAATTTTGAAAAATTCCATCCCAAATATACATTTGGAATAATTATATA
GCACTCTTTATTAATCTCTTATTTCAGTTATTGTTTCCAATGTTTTATGT
TATGAATTTTCCTCAGGTATGTATTTTGGTTTTCCTCTTAGATGCTAGGT
GGGGAAAGTAGGCCTAGTGAATGCCTTCCAGTATTTATTATTACATGTAT
CATCCAAGACTGTGAGGGACTGGCTCACGGTTGACTGAGTTGCCCCAGTA
TACTCCACAAGCGATGAAAGAATGTTATCTTTTATGGGCTTCAGAAGAAA
AAATCCTTCTTTCCTATTATAGCCCTGGACAAAAATGATGGTTTTTCAAT
TTTCGCGAATTTGGTCGAGAATCTCTACCGTTACACTTTTCCGCCAACTG
GGGTTGTACCCCTCGCCCAAATAACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no418_b24.g1 MSMg01no418_b24.g1 CHROMAT_FILE:
MSMg01no418_b24.g1 PHD_FILE: MSMg01no418_b24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:14 2005
         (438 letters)



>mm_chr12_38744720_38745557
          Length = 838

 Score =  774 bits (400), Expect = 0.0
 Identities = 412/416 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgattcataagagtgatcaagtctcttcacttcctcataacttcatcctatcacctgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 tctgattcataagagtgatcaagtctcttcacttcctcataacttcatcctatcacctgt 357

                                                                       
Query: 61  tttcatttatttttcaaattttcttattttgtgatcatgctatctttgacttttattgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 tttcatttatttttcaaattttcttattttgtgatcatgctatctttgacttttattgtg 297

                                                                       
Query: 121 gtgtaaacagatcacattaattacattattatacaataccttatcattgcattatttgga 180
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 296 gtgtaaacagatcacattaattacattattatacaatacctgatcattgcattatttgga 237

                                                                       
Query: 181 aattgtcatggaataagaactataagctgctcacttttatgttatattgtcttatattta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 aattgtcatggaataagaactataagctgctcacttttatgttatattgtcttatattta 177

                                                                       
Query: 241 tattatgttttatcgtgttgttatatttacattgaaggaataattttgaaaaattccatc 300
           |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 176 tattatgttttatcttgttgttatatttactttgaaggaataattttgaaaaattccatc 117

                                                                       
Query: 301 ccaaatatacatttggaataattatatagcactctttattaatctcttatttcagttatt 360
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 116 ccaaatatacatttggaataattatatagcactctttactaatctcttatttcagttatt 57

                                                                   
Query: 361 gtttccaatgttttatgttatgaattttcctcaggtatgtattttggttttcctct 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56  gtttccaatgttttatgttatgaattttcctcaggtatgtattttggttttcctct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 838
Length adjustment: 9
Effective length of query: 429
Effective length of database: 829
Effective search space:   355641
Effective search space used:   355641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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