Query= MSMg01no418_n04.b1 MSMg01no418_n04.b1 CHROMAT_FILE:
MSMg01no418_n04.b1 PHD_FILE: MSMg01no418_n04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:07 2005
(557 letters)
>mm_chr12_112451017_112451976
Length = 960
Score = 978 bits (506), Expect = 0.0
Identities = 546/560 (97%), Gaps = 3/560 (0%)
Strand = Plus / Plus
Query: 1 cacacttcaggtaaagggg--agag-cagcatccaccagcctccctcacttgttacagag 57
||||||||||||||||||| | || ||||||||||||||||||||||| ||||||||||
Sbjct: 201 cacacttcaggtaaagggggaacagccagcatccaccagcctccctcacatgttacagag 260
Query: 58 ctgagcaccgttggggaggggagctacttagagctgcaggagtctgcacagtgaccctga 117
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgagcacagttggggaggggagctgcttagagctgcaggagtctgcacagtgaccctga 320
Query: 118 agtctggatcgtcacttacacagagacaaacctcagagccagagaaagccaccacaaaga 177
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 agtctggatcgtcacatacacagagacaaacctcagagccagagaaagccaccgcaaaga 380
Query: 178 gcagactgtcacatagggttgggaataactgtcttccaaccacagtggtgtcagttaaat 237
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 gcagactgtcacatagggttgggaatagctgtcttccaaccacagtggtgtcagttaaat 440
Query: 238 cctttgacagttgccttttcactgttagcaggaaagaagaacttgtcaccctgggcaagg 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctttgacagttgccttttcactgttagcaggaaagaagaacttgtcaccctgggcaagg 500
Query: 298 gtagccagctcacaagggtataacctggtaggttgctttagctcaaagttgcttcaggtt 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtagccagctcacaagggtataacctggtaggttgctttagctcaaagttgcttcaggtt 560
Query: 358 ttctctaaccaagtctatgtaacttatctatattcaaaaaatgaaacccaggatcttaaa 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttctctaaccaagtctatgtaacttatctatattcaaaaaatgaaacccaggatcttaaa 620
Query: 418 aaggtatagtaagggctggggtctggggcacagtgcgagaaagagtgcttagtgtagaca 477
||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct: 621 aaggtatagtaagggctggggtctggggcgcagtgcaagaaagagtgcttagtgtagaca 680
Query: 478 ggctctgaatttgattcccaccactacagaaaaactcaacaaaagcgaaacaagagcttt 537
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggctctgaatttgattcccgccactacagaaaaactcaacaaaagcgaaacaagagcttt 740
Query: 538 attttttatagagagtagca 557
|||||||| |||||||||||
Sbjct: 741 attttttagagagagtagca 760
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 960
Length adjustment: 10
Effective length of query: 547
Effective length of database: 950
Effective search space: 519650
Effective search space used: 519650
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no418_n04.g1 MSMg01no418_n04.g1 CHROMAT_FILE:
MSMg01no418_n04.g1 PHD_FILE: MSMg01no418_n04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:07 2005
(470 letters)
>mm_chr12_112599208_112600074
Length = 867
Score = 727 bits (376), Expect = 0.0
Identities = 434/470 (92%), Gaps = 30/470 (6%)
Strand = Plus / Minus
Query: 1 atagccattcagctgggcttggagctcgctgtcttgacaggcttccattggagacgctgc 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 atagccactcagctgggcttggagctcgctgtcttgacaggcttccattggagacgctgc 723
Query: 61 cccacttactacagggctggtggccatggagcccatgtcctagcctggagactgtgtctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 cccacttactacagggctggtggccatggagcccatgtcctagcctggagac-------- 671
Query: 121 tggatggacgctggagtctggagtctgtggatggacgcttcagcagtgtgtgttgcatcc 180
| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 670 ----------c----gt-----gtctgtggatggacgcttcagcagtgtgtgttgcatcc 630
Query: 181 ccagaacccggttttggcagccgcttcccttcactgtcttccctgtacaccatgcagtct 240
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 629 ccagaacccagttttggcagctgcttcccttcactgtcttccctgtacaccatgcagtct 570
Query: 241 gatctgaccttcccaggcaccttgtctgctttactccaagctctccctccatgtgatggg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 gatctgaccttcccaggcaccttgtctgctttactccaagctctccctccatgtgatggg 510
Query: 301 caatttgaagagaaaggggtatggctctgcgctctccagccccttaccttccgtgtgcta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 caatttgaagagaaaggggtatggctctgcgctctccagccccttaccttccgtgtgcta 450
Query: 361 gccaggggttcacccaagagctacagggcagcttcctgggaaactcccgtcttcgtggaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 449 gccaggggttcacccaagagctacagggcagcttcctgggaaactcccgtc-tcatggaa 391
Query: 421 ccacatagacacgggctatggggatgtgtggtaagccttgcttcttcctg 470
| |||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 390 c--catagacacgggttatggggatgtgtggcaagccttgcttcttcctg 343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 867
Length adjustment: 10
Effective length of query: 460
Effective length of database: 857
Effective search space: 394220
Effective search space used: 394220
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
