Query= MSMg01no419_f03.b1 MSMg01no419_f03.b1 CHROMAT_FILE:
MSMg01no419_f03.b1 PHD_FILE: MSMg01no419_f03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:48 2005
(251 letters)
>mm_chr12_47889649_47890299
Length = 651
Score = 439 bits (227), Expect = e-128
Identities = 245/251 (97%)
Strand = Plus / Plus
Query: 1 cttttagagagaacatgaagttgcagagaaaaagggtggggtcctagaaaaagatttgga 60
|||||| |||||||||||||||||| ||||||| ||| ||||||||||||||||||||||
Sbjct: 201 cttttaaagagaacatgaagttgcaaagaaaaaaggtagggtcctagaaaaagatttgga 260
Query: 61 gaggaaagactgtgagtatattccatcaaaatattacatgtatctatggaatttttaaac 120
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 gaggaaagactgtgaatatattccatcaaaatattatatgtatctatggaatttttaaac 320
Query: 121 tattaagaaattaattaagaaaattttaaacgtaaaaatattctaacagccagaggagaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tattaagaaattaattaagaaaattttaaacgtaaaaatattctaacagccagaggagaa 380
Query: 181 aataacaaaacaatttagcaaaattttaaaactacagtcaatataaatattaagggcata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aataacaaaacaatttagcaaaattttaaaactacagtcaatataaatattaagggcata 440
Query: 241 taataataaca 251
|||||||||||
Sbjct: 441 taataataaca 451
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 651
Length adjustment: 9
Effective length of query: 242
Effective length of database: 642
Effective search space: 155364
Effective search space used: 155364
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no419_f03.g1 MSMg01no419_f03.g1 CHROMAT_FILE:
MSMg01no419_f03.g1 PHD_FILE: MSMg01no419_f03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:48 2005
(511 letters)
>mm_chr12_48080489_48081399
Length = 911
Score = 756 bits (391), Expect = 0.0
Identities = 421/431 (97%), Gaps = 2/431 (0%)
Strand = Plus / Minus
Query: 80 ggatgaggacacaggctgtctttaatgtagagtgggacaattcaaatgtttataacttcc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 911 ggatgaggacacaggctgtctttaatgtagagtgggacaattcaaatgtttataacttcc 852
Query: 140 tctttctcaggtgactccaagtatgtcaagttaacatc-tgaacctaactatgacatccc 198
|||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||
Sbjct: 851 tctttctcaggtgactccaagtatgtcaagttaaca-catgaagctaactatgacatccc 793
Query: 199 cttccttttaacctataacacagcagcatcactttaaaccataaccattcttttcttgtt 258
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 792 cttccttttaacctataacacagcaacatcactttaaaccataaccattcttttcttgtt 733
Query: 259 agttcccaagatcttatgttaatttaatggtgatgagatagtagtctagaggtaaaataa 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 agttcccaagatcttatgttaatttaatggtgatgagatagtagtctagaggtaaaataa 673
Query: 319 aagcggagagatggattgcttaagcagggagtcttataagactaggggggagtggatgtg 378
||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 672 aagtggagagatggattgcttaagcaggtagtcttgtaagactaggggggagtggatgtg 613
Query: 379 gttgaagcaggttccagcactaaggaagagtgtgtgaaactcataaccaacctgttatat 438
||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 612 tttgaagcaggttccagcactaaggaagggtgtgtgaaactcataactaacctgttatat 553
Query: 439 tacaacttaatttaaaaaataatttcaagcacaatagaatacatgtgaaataaaaacagg 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 tacaacttaatttaaaaaataatttcaagcacaatagaatacatgtgaaataaaaacagg 493
Query: 499 gctgaagcagg 509
|||||||||||
Sbjct: 492 gctgaagcagg 482
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space: 451401
Effective search space used: 451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
