BAC Information

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BAC

Clone NameMSMg01-419K21
Chromosome12 (Build37)
Map Location 39,531,159 - 39,531,576
singlet/doubletsinglet
Overlap geneEtv1
Upstream geneLOC100043139, Dgkb, LOC668824, LOC100043142
Downstream geneLOC100043145
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419K21.T7 (MSMg01no419_k21.b1)MSMg01-419K21.TJ (MSMg01no419_k21.g1)
ACCAG514724AG514725
length807808
length of high quality
(start - end)
378 (49 - 426)420 (65 - 484)
definitionCHROMAT_FILE: MSMg01no419_k21.b1 PHD_FILE: MSMg01no419_k21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:18 2005CHROMAT_FILE: MSMg01no419_k21.g1 PHD_FILE: MSMg01no419_k21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNCCTCXXXXXXXXXXXXXXXXXXXXXXXXXCTATTTTCACAGGATCC
GCGGAATTCATTGTTTTTCCCAACTGAGCAGTATTCCATTGTGTAAATGT
ACCACATTTTCTGTATCCATCCTCTGTTGAGGGACATATGGGTTCTTTCC
AACTTCTGGCTATTATAAATAAAGCTGATGTGAACATAGTGAAGTTTATT
TCCTTATTACATGTTTGAGCATCTTCTGAGTATATGCCCAGGAGTGGTAT
AGCTGGGTCCTCTGGTATTACTATGTCCAATTTCACAATAGTCACCAACA
ATATAAAGTATCTTGGTGTGACACTAACCAAAGAAGTGAAAGATCTGTAT
GACAAGAACTTCAAGTCTCTAAAGAAAGAAATCAAAGAAGACCTCAGAAG
AGGGAAAGATCCCCCATGCTCATGGATTGGCAGGAATAATATATTATAAA
TGGCCATCTTGTCCTAAGCAATATACAGATTCCATGAAATCCCTATCAAA
TTTCAACTCCATTCTACCTAAAGTTAGAAAGAACAATTCCCAAATCATCT
GGAATTTCCCAAATTCCGAAAAGCCGAAAACCATTCTTTTTTTTTCTAAA
AAAAAATTTGTGTAAAAGATTTCTCTTTTACCTTTCCAAGGGCACCCCAA
AAGCCCCTTAACCTAATTTCCCCCTATACCCAAACCCCCCCCTGTGGTTT
TGTTGGGGAGATTTTCCTTGTTTGTGGAAAAAATATTCCCGAAAAAAGGG
GCTCCTCCCCCTAAAGGCTGGGAGGACCTTCTCCCCTTTCTAATAATTAT
TACAACC
GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTGTACACAGCAATAATTAACATTAAAACAGAGTCCG
GGTGTAGTTCCGTGGTAACATATTTGCCAATCGGGCCACATGCACAAGGC
CCCAGTTTGATCCTCAGCTCTGAAGAACAACAACAACAACAACAACAAAA
AAAAAAAACCCTCAAAACTAAAAAACAAACAACCCCAAAAACAAAACAGC
AACTACAAATTGCAGGACATAATCTTTTAAAATCCACAGGGTAGTTGTTG
GTGTAAGACAAAGAGTTATTGTCACAAACACTGAGCTCTTGGCTGGGAAA
CCCTCTGACTACACCTGTGTGCAAGGGGTACTTTGTGAAAATAAAGGTAA
ACTTAAAAAAAAAAGACTTAGCCATATTTTCTGCACATAGTGATAGATGC
AAAGGTAAATACATAATAGTTCCTCTGCATCATAGACAGTACCCTTCATG
TGATGTAACATAAATGGGTAGGGGAAGGATTTAAGGTTATCTTGTGGAAG
GGAAAGATTTATTGTNNNNNNNGNGNNTNGNNNNNAAAATTAATCCANNT
TTTAGNTTTNAAAAAAAATTGGGGANTTTATAAAANNNNGGTNAATTTGG
GATGGTATTTTTTTTTTTTTAATGGATGTTTTTTTGTGTAATNGGGATAA
ANAATTTTTTAAATGAGGGTAAAGGATTANNTTTGTTAGTAGTATATTAT
GGTATATNTNTTGTAAATTATANTTAGTANNGGTTTAAAGAAATTTATTG
GGATTAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_k21.g1 MSMg01no419_k21.g1 CHROMAT_FILE:
MSMg01no419_k21.g1 PHD_FILE: MSMg01no419_k21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:18 2005
         (420 letters)



>mm_chr12_39530769_39531589
          Length = 821

 Score =  745 bits (385), Expect = 0.0
 Identities = 411/421 (97%), Gaps = 4/421 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtacacagcaataattaacattaaaacagagtccgggtgtagttccgtggtaacatatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 tgtacacagcaataattaacattaaaacagagtccgggtgtagttccgtggtaacatatt 749

                                                                       
Query: 61  tgccaatcgggccacatgcacaaggccccagtttgatcctcagctctgaagaacaacaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 tgccaatcgggccacatgcacaaggccccagtttgatcctcagctctgaagaacaacaac 689

                                                                       
Query: 121 aacaacaacaacaaaaaaaaaaaaccctcaaaactaaaaaacaaacaaccccaaaaacaa 180
           ||||||||||||   || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 aacaacaacaac---aacaaaaaaccctcaaaactaaaaaacaaacaaccccaaaaacaa 632

                                                                       
Query: 181 aacagcaactacaaattgcaggacataatcttttaaaatccacagggtagttgttggtgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 aacagcaactacaaattgcaggacataatcttttaaaatccacagggtagttgttggtgt 572

                                                                       
Query: 241 aagacaaagagttattgtcacaaacactgagctcttggctgggaaaccctctgactacac 300
           ||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 571 aagacaaagagttagggtcacaaacactgagctcttggctgggaaaccctgtgactacac 512

                                                                       
Query: 301 ctgtgtgcaaggggtactttgtgaaaataaaggtaaactt-aaaaaaaaaagacttagcc 359
           | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 511 ccgtgtgcaaggggtactttgtgaaaataaaggtaaacttaaaaaaaaaaagacttagcc 452

                                                                       
Query: 360 atattttctgcacatagtgatagatgcaaaggtaaatacataatagttcctctgcatcat 419
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 451 atattttctgcacatagtgatagatgcaaagggaaatacataatagttcctctgcatcat 392

            
Query: 420 a 420
           |
Sbjct: 391 a 391


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 821
Length adjustment: 9
Effective length of query: 411
Effective length of database: 812
Effective search space:   333732
Effective search space used:   333732
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)