Query= MSMg01no419_m23.b1 MSMg01no419_m23.b1 CHROMAT_FILE:
MSMg01no419_m23.b1 PHD_FILE: MSMg01no419_m23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:27 2005
(242 letters)
>mm_chr12_118002467_118003108
Length = 642
Score = 437 bits (226), Expect = e-127
Identities = 238/246 (96%), Gaps = 8/246 (3%)
Strand = Plus / Minus
Query: 1 atctctctgtgcacatattttt----tccactctgctactggatgagaagtgctggctgt 56
||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 310 atctctctgtgcacata----tccaatccactctgctactggatgagaagtgctggctgt 255
Query: 57 ctttctggttcatctggactaaagtgaagctttcacccaatatgtccttagtggctttct 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 ctttctggttcatctggactaaagtgaagctttcacccaatatgtccttagtggctttct 195
Query: 117 gattgatctttccatccctgaaatggagccctgaggacttctcactgtattgtggtctgt 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 gattgatctttccatccctgaaatggagccctgaggacttctcactgtattgtggtctgt 135
Query: 177 ttaaacctatcatcctctactctgtatatttaggtgccctgttccttgtaactcatggag 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 ttaaacctatcatcctctactctgtatatttaggtgccctgttccttgtaactcatggag 75
Query: 237 ctgctc 242
||||||
Sbjct: 74 ctgctc 69
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space: 147489
Effective search space used: 147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no419_m23.g1 MSMg01no419_m23.g1 CHROMAT_FILE:
MSMg01no419_m23.g1 PHD_FILE: MSMg01no419_m23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:28 2005
(409 letters)
>mm_chr12_117845565_117846373
Length = 809
Score = 772 bits (399), Expect = 0.0
Identities = 405/409 (99%), Gaps = 4/409 (0%)
Strand = Plus / Plus
Query: 1 tcttcccttagagcattttcatttcattttcaacaacatcttcaagctccaagcttttta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttcccttagagcattttcatttcattttcaacaacatcttcaagctccaagcttttta 260
Query: 61 aaatggaagacaagacagaacaacccatgtatggagactcccaggggaagcaggaaacat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatggaagacaagacagaacaacccatgtatggagactcccaggggaagcaggaaacat 320
Query: 121 gggcatagatggttgttcagacacaggtgtgacagttagcctagtaaagaagttcaagac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggcatagatggttgttcagacacaggtgtgacagttagcctagtaaagaagttcaagac 380
Query: 181 atagggtggctcagaggaggctcagcatccccaggatgcagatctcatgcttggagctac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atagggtggctcagaggaggctcagcatccccaggatgcagatctcatgcttggagctac 440
Query: 241 catctttattattttttttaaatatttttttttattttatgtatatgagttctctgtagc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catctttattattttttttaaatatttttttttattttatgtatatgagttctctgtagc 500
Query: 301 tatcttcacacacacacacacacacacacacacacacacacacacacacacacacacaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatcttcacacacacacacacacacacacacacacacacacacacacacacacacacaca 560
Query: 361 cacacacacctgatgagggcatcaagtcccattacagatggttctgagc 409
||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cacac----ctgatgagggcatcaagtcccattacagatggttctgagc 605
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 75
Number of extensions: 33
Number of successful extensions: 33
Number of sequences better than 10.0: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space: 320000
Effective search space used: 320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
