BAC Information

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BAC

Clone NameMSMg01-419N19
Chromosome12 (Build37)
Map Location 86,463,365 - 86,595,594
singlet/doubletdoublet
Overlap geneDlst, Rps6kl1, LOC100042021, Pgf, Eif2b2, Mlh3
Upstream geneDnalc1, Pnma1, C130039O16Rik, EG432676, Zadh1, Zfp410, 9830169C18Rik, Coq6, Entpd5, 2900006K08Rik, Rnf113a2, Aldh6a1, Lin52, Chx10, Abcd4, 7420416P09Rik, Tmem90a, Npc2, Isca2, Ltbp2, 1110018G07Rik, Fcf1, Ylpm1, Prox2
Downstream geneAcyp1, 2810002I04Rik, Nek9, Tmed10, LOC100042549, LOC667119, Fos, EG667124, Jundm2, LOC100042073, Batf, BC011209, 0610007P14Rik, Ttll5, Tgfb3, 1700019E19Rik, 1700020O03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419N19.T7 (MSMg01no419_n19.b1)MSMg01-419N19.TJ (MSMg01no419_n19.g1)
ACCAG514863AG514864
length784774
length of high quality
(start - end)
358 (82 - 439)515 (63 - 577)
definitionCHROMAT_FILE: MSMg01no419_n19.b1 PHD_FILE: MSMg01no419_n19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:32 2005CHROMAT_FILE: MSMg01no419_n19.g1 PHD_FILE: MSMg01no419_n19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,463,365 - 86,463,722)(86,595,080 - 86,595,594)
sequence
NGGCCTTTTNTTCTATAATTTGGGGCGGGTAAGGAAGACCTTTTCTTTAA
AGAAGCGCGGAAATTCGTTTCTCTGTTAAAACTGTTATAGACATGGCCAG
GCTTTTATCTTCCCAGTGGTTCTAAGTCCTGTCAAATTGACAGTCAAGAT
TAATCCTTACAGTCTCTGACTCCCAGGGAGAAGGGACTTCGTGTCCCTCA
CAGTTACAGTCTGATGCCATGGCTCTGAATACACCAAGTTTGCTGAAGAA
CTGGGTTTGCAAACCAGCCTTCTATTTATTTGCTAACCATATGACACTAG
TCTAATTACTTCTATGACTAGATTGTTCATCTGCGAGTTTGGAATGATGC
TGATAAACTTTAGTATCTTGAGGGTAAAGGGTTAATACGGTGCAGAAAGT
ATTGCTGTCCGTGTCCGATGTAGCTGTGCACTCTCTTCATTTTCAGTGTC
TGCAATNAAAACCACTGCTGCCCCTCCCCTGGCTGAGGCAGGAGCTGCTA
AAGGTCTGCGTTCAGAAAATCGGGAAGCCTCCCGACACTTCAGGAAATGG
CAAAAAACCCTGTGGAAAAGAAGGAATGTGGCCCCCTATAAAAGGTTGGC
CCTCTTTGCTTGCCTTTTTAGGGGAAAAAGTAATTTTCCCTTGTTCCTTT
CGGCAAGTGAATAAAAAAACCTGGCTCTCTATTGTTGGTCCCCTCTTTAT
TGTTGGGGTACCGCCTCCCTTTTATTTATTTTTTATAAAACCTCTTCTCT
CTTCCCTCCTATCTTCCCCCTTTTCCCCCTTTTC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTCTTGAGGCTGAGGATGTAGCTCTGTTGCTAGCATGCT
TCCTGGTGTGGATGAAAGCCTGGGTTCAACCCCAGCACTGTATGAGACTG
AGCGTGTTCTATAAGTCCAGGAAGAGGAAGGCAGTGGTAGCATCTTCCTC
AGCTAAATAGCAAGTTCAAGACCAGCCTGAGCTGTTTTTCATGAGACCGT
CAGAAACAAAGTTTAATATTTTCCTCCGAACCAAATGTGAGTGTTTTTAT
TTCTAGTCATAAATATTCTACCTATTCCTAAGTTGACATATTTTAATCTT
TATATTTGCCTGTTTGTTTTATTTTTGTTTTTGTTTTTGAGACAGTTTTT
TTATTGTATAGCCCTGGCTGACCTGGAACTCTCTATGTAGACCAGGTTGG
CTTTGAATTCACAAGATTATGTTCTTCCTGAGTGCCAGGGTTAAAGACAT
GTGTCGTCATCACTCCTAATTAATATTGACATATTTTAATTGGATACATG
TTATTGCTCTAAATTTCAGTGAAACCAATAACTAAGGCATAGTTCTTCCT
ACCTTGAGCTATGTTAATTCAGTTATCCCTTCTAAAGAAAAAATTTATTA
TATAAAAAGTTTTTAGGACCCCATTATTTAAAATTCTTTTTTTTGGGGCT
AAAAGGTATATTGGAAACACCTCCTATAATTTTTGCCCCGTGTGGGTGGC
CAAAAAATGGGGTCCGTGAACAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_n19.b1 MSMg01no419_n19.b1 CHROMAT_FILE:
MSMg01no419_n19.b1 PHD_FILE: MSMg01no419_n19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:32 2005
         (358 letters)



>mm_chr12_86463165_86463922
          Length = 758

 Score =  685 bits (354), Expect = 0.0
 Identities = 357/358 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgttatagacatggccaggcttttatcttcccagtggttctaagtcctgtcaaattgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgttatagacatggccaggcttttatcttcccagtggttctaagtcctgtcaaattgac 260

                                                                       
Query: 61  agtcaagattaatccttacagtctctgactcccagggagaagggacttcgtgtccctcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtcaagattaatccttacagtctctgactcccagggagaagggacttcgtgtccctcac 320

                                                                       
Query: 121 agttacagtctgatgccatggctctgaatacaccaagtttgctgaagaactgggtttgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agttacagtctgatgccatggctctgaatacaccaagtttgctgaagaactgggtttgca 380

                                                                       
Query: 181 aaccagccttctatttatttgctaaccatatgacactagtctaattacttctatgactag 240
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 aaccagccttctatttatttgctaaccatatgacactagtttaattacttctatgactag 440

                                                                       
Query: 241 attgttcatctgcgagtttggaatgatgctgataaactttagtatcttgagggtaaaggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attgttcatctgcgagtttggaatgatgctgataaactttagtatcttgagggtaaaggg 500

                                                                     
Query: 301 ttaatacggtgcagaaagtattgctgtccgtgtccgatgtagctgtgcactctcttca 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttaatacggtgcagaaagtattgctgtccgtgtccgatgtagctgtgcactctcttca 558


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 358
Length of database: 758
Length adjustment: 9
Effective length of query: 349
Effective length of database: 749
Effective search space:   261401
Effective search space used:   261401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no419_n19.g1 MSMg01no419_n19.g1 CHROMAT_FILE:
MSMg01no419_n19.g1 PHD_FILE: MSMg01no419_n19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:32 2005
         (515 letters)



>mm_chr12_86594899_86595813
          Length = 915

 Score =  942 bits (487), Expect = 0.0
 Identities = 508/515 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttgaggctgaggatgtagctctgttgctagcatgcttcctggtgtggatgaaagcctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 tcttgaggctgaggatgtagctctgttgctagcatgcttcctggtgtggatgaaagcctg 637

                                                                       
Query: 61  ggttcaaccccagcactgtatgagactgagcgtgttctataagtccaggaagaggaaggc 120
           ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct: 636 ggttcaaccccagcactgtataagactgagcatgttctataagtccaggaagaggaaggc 577

                                                                       
Query: 121 agtggtagcatcttcctcagctaaatagcaagttcaagaccagcctgagctgtttttcat 180
           || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 agcggtagcatcttccttagctaaatagcaagttcaagaccagcctgagctgtttttcat 517

                                                                       
Query: 181 gagaccgtcagaaacaaagtttaatattttcctccgaaccaaatgtgagtgtttttattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gagaccgtcagaaacaaagtttaatattttcctccgaaccaaatgtgagtgtttttattt 457

                                                                       
Query: 241 ctagtcataaatattctacctattcctaagttgacatattttaatctttatatttgcctg 300
           |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 ctagtcataaatatgcaacctattcctaagttgacatattttaatctttatatttgcctg 397

                                                                       
Query: 301 tttgttttatttttgtttttgtttttgagacagtttttttattgtatagccctggctgac 360
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttgtcttatttttgtttttgtttttgagacagtttttttattgtatagccctggctgac 337

                                                                       
Query: 361 ctggaactctctatgtagaccaggttggctttgaattcacaagattatgttcttcctgag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ctggaactctctatgtagaccaggttggctttgaattcacaagattatgttcttcctgag 277

                                                                       
Query: 421 tgccagggttaaagacatgtgtcgtcatcactcctaattaatattgacatattttaattg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tgccagggttaaagacatgtgtcgtcatcactcctaattaatattgacatattttaattg 217

                                              
Query: 481 gatacatgttattgctctaaatttcagtgaaacca 515
           |||||||||||||||||||||||||||||||||||
Sbjct: 216 gatacatgttattgctctaaatttcagtgaaacca 182


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space:   457025
Effective search space used:   457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)